barSeed - Barley Seed Development Database

Probe CUST_14354_PI390587928

Source Contig U35_20421

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14354_PI390587928	Hv_44K_v2	GTACCTGCCAGTCGACTAACAAAGAGACTCACTACAAGATGCAAGAACAGAGTGTTTTTT	557	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.552	0.574	1.129	1.747	1.025	1.170
Raw	49.691	75.718	137.251	312.215	69.698	86.341

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11338.3	1891	7e-23	1767 - 1826	98	59 / 60	minus	ABC12978
MLOC	MLOC_11338.4	1480	7e-23	756 - 815	98	59 / 60	minus	ABC12978 ABC12979 ABC39229
MLOC	MLOC_11338.2	2535	7e-23	1767 - 1826	98	59 / 60	minus	ABC12978 ABC12979 ABC39229
JLOC1	JLOC1_7503.1	1295	4e-23	521 - 580	98	59 / 60	plus
JLOC1	JLOC1_7502.1	2488	4e-23	1773 - 1832	98	59 / 60	minus
Harvest21	ABC12978	631	3e-25	558 - 617	100	60 / 60	plus	ABC12978
Harvest35	U35_20421	631	3e-25	558 - 617	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_20421 631 Hv_44K_v2
GCTAGTCTACTAGCATCTACCCGGTTTGCTTAAAGAGAAGGTTGCTGGCCTGCATCTTTC
CGCTGCGCCTTGGTCAAACATGGCTTCCATGGGCTTCAGCTATGCGCAGATACATGTGCG
GCAGGAGAAGGTCAGGCAGAGGATCATCAACCAGCAAGAAGCCGCCAACAAGACGGCCGT
GAAGAACAAGAACGTCTGTGAAGAGAGTAAGATCAGCAACAGCAAGAAAAACTGCGGCTC
ATTGACCGCCGCCGGCAGGGTGCATCCGTGCGCATCTCCCTCGGCGGCGGCGGCGGCGGC
GGCGGCGGCTGGGCCGACGCCGGAGAGGTGAGGCTGGCCGGCGATGAGTTTTCTCTTCAT
GCCACAAGAGCCTTGATTTGAGAGTCTAGTTTGTACTCGTATTTGTGACTAGTTTAGTTT
GTCTCTAAGATTTCCTCAAGGGAATAAAGATGTGTTTTTCCAGAAACCTGTGGATATACC
ATCATCGTTCAACGACCAACAAGCAAATATGCTCCAGCCACAGTTATCCGATAGCTCGAA
ACCCCCCACCTAAAATTGTACCTGCCAGTCGACTAACAAAGAGACTCACTACAAGATGCA
AGAACAGAGTGTTTTTTTTAAAAAAAAAAAA

Homology of Contig U35_20421 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None