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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_14353_PI390587928Hv_44K_v2GTGACTAGTTTAGTTTGTCTCTAAGATTTCCTCAAGGGAATAAAGATGTGTTTTTCCAGA401GeneList: saddlebrown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1880.2230.8851.6051.2091.536
Raw 638.8641158.6114072.03010912.4533036.0834210.607



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_11338.414802e-24907 - 96610060 / 60minus ABC12978 ABC12979 ABC39229
MLOCMLOC_11338.225352e-241918 - 197710060 / 60minus ABC12978 ABC12979 ABC39229
JLOC1JLOC1_7502.124888e-251924 - 198310060 / 60minus
Harvest21ABC129794773e-25402 - 46110060 / 60plusABC12979
Harvest21ABC129786313e-25405 - 46410060 / 60plusABC12978
Harvest35U35_204224773e-25402 - 46110060 / 60plus
Harvest35U35_204216313e-25405 - 46410060 / 60plus



Contig Sequence (477 bp)

>U35_20422 477 Hv_44K_v2
AAAACATCTAGTCTACTAGCATCTACCCGGTTTGCTTAAAGAGAAGGTTGCTGGCCTGCA
TCTTTCCGCTGCGCCTTGGTCAAACATGGCTTCCATGGGCTTCAGCTATGCGCAGATACA
TGTGCGGCAGGAGAAGGTCAGGCAGAGGATCATCAACCAGCAAGAAGCCGCCAACAAGAC
GGCCGTGAAGATCAAGAACATCTGTGAAGAGAATAAGATCAGCAACAGCAAGAAAAACTG
CGGCTCATTGACCGCCGCCGGCAGGGTGCATCTGTGCGCATCTCCCACGGCGGCGGCGGC
GGCGGCTGGGCCGACGCCGGAGAGGTGAGGCTGGCCGGCGATGAGTTTTCTCTTCATGCC
ACAAGAGCCTTGATTTGAGAGTCTAGTTTGTACTCGTATTTGTGACTAGTTTAGTTTGTC
TCTAAGATTTCCTCAAGGGAATAAAGATGTGTTTTTCCAGAAAAAAAAAAAAAAAAA



Homology of Contig U35_20422 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None