barSeed - Barley Seed Development Database

Probe CUST_14346_PI390587928

Source Contig U35_20429

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14346_PI390587928	Hv_44K_v2	TCAGTCGAACTCAGATGAATTCAGAAATATGCTCCTTTTGAACTATGTTGTGCCCTTTAA	1003	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.003	1.302	1.541	1.262	0.413	0.411
Raw	59.185	124.308	123.076	155.028	18.527	19.459

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376419	2012	9e-22	1846 - 1903	98	58 / 59	plus	ABC42951
MLOC	MLOC_16660.1	2402	9e-22	721 - 778	98	58 / 59	minus	ABC42951
MLOC	MLOC_16660.3	3391	9e-22	697 - 754	98	58 / 59	minus	ABC42951
MLOC	MLOC_16660.4	3331	9e-22	498 - 555	98	58 / 59	minus	ABC42951
JLOC1	JLOC1_11493.2	2369	5e-22	1648 - 1705	98	58 / 59	plus
JLOC1	JLOC1_11492.1	2372	5e-22	651 - 708	98	58 / 59	minus
Harvest35	U35_20429	1078	3e-25	1004 - 1063	100	60 / 60	plus

Contig Sequence (1078 bp)

>U35_20429 1078 Hv_44K_v2
GCTGAGTTTCCTCCCCTTGCCTCCCTTTGCTTGTACATGAGTAAGTTTGGGGTCTTTCTA
AATGGCCCTTATGATCTTCGACTACGGATGGTCCACGCGGCTGTCACCGTCCATGTGGGT
GGCAGTATCACCATCATGCTCGCGCTCAGTCATGCCGAGCGCATGGCGTACGTATCCACC
GGTGAAAAACACTGGACTCACACAAGCTGGATGATGACTGGTATGAGGACAGCACTGCCA
TTCCGTGGCAGCCTCTACATGGTGAGGAGCTAGAAAAACAAACCCTCACAGATCATGCGC
GTCGATCCACCAGATAGCTCCAGTTCCTCTTCGTGGCCGTCTAGACCACCACAAATGATC
GCCACATGTCCAGCTAGTCAGATGACTAAGCCTTACCTGGTGGAGTGCAATTCTGAACCT
TTTCTGGTCAGCTATACCGACAGACACTCCCGGCCTGTGGTTATCCGGCTTGCTGACCTC
CTGCTCGGAGTCCCTGCCACGCCATTGACAAGCATCGGCGACCATGCCCTGTTCATTGGC
ACTTGGAGCATGGCTGTTAACTGCAGCAACCTACCATCCGTTCAGGGGAACTCCGTCACC
ATCCTCAACCCAACGCTGTGGAGCGGCCGACTGCGGCAATATGATTTAGGGAGAGGTACC
TGGTCACCGCTGTGTGATGGAAACTTTGATTTCGGTAGTACCAGCTGTCCCATACCGAGG
CCATACAGTCTTGTTCACCACATTGTTAGTTGTTGCCAGCGTCTTTACTGGATCAATGGG
CACATATGGACCCGCCATCATTATTTTGAACATTGTTGGCATGGGGTCGCTGCAGTACAT
AGAAGAGTTTGCACAGTCTGCAGTGATCAGTTGAAGGCTATTCATCTTTCCAACGTTTAC
GTTTGAATGTCTCTGCTTTGCAGGTCATCACACAGCTTCATGTGGTACGAACACATGTCC
ACAGAAGGTTTGGGTTGTAGTTGTCTACTCTTGTTATGACATTTCAGTCGAACTCAGATG
AATTCAGAAATATGCTCCTTTTGAACTATGTTGTGCCCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g20030.1	423	1e-82
Arabidopsis v10	None