barSeed - Barley Seed Development Database

Probe CUST_14341_PI390587928

Source Contig U35_18112

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14341_PI390587928	Hv_44K_v2	TGACAGAACTCAGATGTGGACAGCAAAATGTATATGCATTTGCCATTTAGTCCTAATCAA	983	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.051	3.083	1.064	0.941	0.901	0.802
Raw	38.925	38.095	11.627	15.724	2.700	3.771

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81864.3	5425	2e-23	4527 - 4584	100	58 / 58	minus	ABC07995
MLOC	MLOC_81865.2	1236	2e-23	640 - 697	100	58 / 58	minus	ABC07995
MLOC	MLOC_81865.1	6519	2e-23	5266 - 5323	100	58 / 58	minus	ABC07995
MLOC	MLOC_81864.2	4955	2e-23	1869 - 1926	100	58 / 58	minus	ABC07995
JLOC1	JLOC1_54453.2	2230	1e-23	1239 - 1296	100	58 / 58	plus
JLOC1	JLOC1_54453.1	1995	1e-23	1004 - 1061	100	58 / 58	plus
JLOC1	JLOC1_54452.2	2591	1e-23	1871 - 1928	100	58 / 58	minus
JLOC1	JLOC1_54452.1	2574	1e-23	1854 - 1911	100	58 / 58	minus
Harvest21	ABC07995	1058	3e-25	984 - 1043	100	60 / 60	plus	ABC07995
Harvest35	U35_18112	1058	3e-25	984 - 1043	100	60 / 60	plus

Contig Sequence (1058 bp)

>U35_18112 1058 Hv_44K_v2
CTCGCTCACACAAAAATCTCTACTCTTTCCCTCCCGTGCCGTGGCCTGCCATGGCGCTCG
TCTCGCTCCCGCCCGCCGCCGCCGCCTCCTCGTCGTCTACCACCCACCTCCTGACGCCGC
CGGCGAGCATCGGCATCAGCAGCGTCGGCGGGAGGGGAGGGCCACGCCCACGGGGCGACG
GGGGCCTCGCGCTGCCGCTGCCGGCCGGGCGCCGTCGGGGGTGGGGCGCGCCGGTGTCGT
CCTTCTCCTCCTTCCTGCCGTCCTTCTTCACGGGGAGCAAGAAGAAGGAGGAGGAGGACG
CCAAGAAGGCCGAGAGGCTCAAGGCGGAGCTGCTGGCGGCCATCGCGCCGCTCGACCGCG
GCGCCGAGGCCACGCCCGAGGACAAGGACCGCGTCGACCAGATCGCGCAGCGGCTGGAGG
AGGTGAGCCCGACCAAGGAGCCGCTCAAGTCCGAGCTCCTCAACGGCAAGTGGGAGCTCC
TCTACACCACCTCCACTTCCATTCTCCAGCCACAGAGGCCAAAGTTTCTGAGGCCATACG
GGACGATTTACCAGGCGATCAACACCGACACGCTACGAGCTCAAAACATGGAGACACTGC
CTTACTTCAATCAGGTCACTGCCAACTTGGTGCCTCTCAACTCTAGAAAAGTGGCAGTTA
GGTTTGATTACTTCAAAATATTTAGCCTGATCCAAATCAAAGCACCTGGAAGTGGCAAAG
GTGAACTAGAGATCACATATCTTGATGAAGAGCTCAGGGTTTCAAGAGGAGACAAGGGGA
ACTTGTTCGTGCTGAAGATGGTCGACCCATTATACCGAGTTCCGTTGTAATAACCGTAGC
TAAATGCTAGTGTCCACCGCTACGAGAATCAGGTGCCAACAATCCAAAATGTTCAAAAAA
AAATCGGCCCGGGCCAAATACAGGACGTGTAAATATTAAGGTTTGAGTTTAATTAGTCTA
TACAGCACATGGCACATTTGAACTGACAGAACTCAGATGTGGACAGCAAAATGTATATGC
ATTTGCCATTTAGTCCTAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18112 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49720.1	263	8e-94	protein\|PAP fibrillin family domain containing protein, expressed
Brachypodium v1_2	Bradi1g11000.1	261	2e-100
Arabidopsis v10	AT3G26070.1	242	8e-70	Plastid-lipid associated protein PAP / fibrillin family protein \| chr3:9526904-9528199 FORWARD LENGTH=242