- Probe CUST_1433_PI390587928
- Source Contig U35_45990
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1433_PI390587928 | Hv_44K_v2 | CCATTTCCAAGGCATGGCAGATTTTCAGCATGTCGTCCCAGTTCATGCTGCTCAAGTTAG | 528 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.789 | 1.452 | 1.091 | 0.707 | 0.378 | 0.296 |
| Raw | 426.038 | 497.935 | 354.028 | 329.471 | 68.894 | 58.065 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_10351.4 | 2059 | 2e-24 | 524 - 583 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10351.1 | 2726 | 2e-24 | 1798 - 1857 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_10351.8 | 1988 | 2e-24 | 1309 - 1368 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_10351.6 | 2491 | 2e-24 | 1812 - 1871 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_10351.5 | 1988 | 2e-24 | 1386 - 1445 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_10351.7 | 2054 | 2e-24 | 1322 - 1381 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_10351.2 | 2924 | 2e-24 | 1996 - 2055 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_10351.9 | 1827 | 2e-24 | 1185 - 1244 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_10351.3 | 2444 | 2e-24 | 1516 - 1575 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_6770.9 | 2390 | 8e-25 | 598 - 657 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6770.8 | 2344 | 8e-25 | 562 - 621 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6770.7 | 2287 | 8e-25 | 562 - 621 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6770.6 | 2636 | 8e-25 | 562 - 621 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6770.5 | 2703 | 8e-25 | 562 - 621 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6770.4 | 2629 | 8e-25 | 562 - 621 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6770.3 | 2280 | 8e-25 | 562 - 621 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6770.2 | 2696 | 8e-25 | 562 - 621 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6770.1 | 2347 | 8e-25 | 562 - 621 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC45468 | 588 | 3e-25 | 529 - 588 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45990 | 588 | 3e-25 | 529 - 588 | 100 | 60 / 60 | plus |
Contig Sequence (588 bp)
>U35_45990 588 Hv_44K_v2 ACCACCGCGGCGCCGCTCCCCTCGTCGGCGTTCACCCTCTCCGCCCTCGCCCCACTTCGT CCGCGAGCCCGGCAGGCGACGCGGGCGGCCAAGCCCCAGCGCCTGCCCGGCTGCCCCTCT CCCAGCCTTATCAAACACCCCCTCTAACATTGCCTTTCAGATGGTCTCCTCCACCCCCAT CCCCACGGCCGCGTCGGCGGCGGCGCCCGAGTCACCGTCCACCATCACGGACGGCGCCGT CAGCGGCACACTCCCGGGGACCGAGGCCTTCGCCGTGTACTACCCGGGATACCCCTCTTC TCCCGCTCGCGCCACCCATACCCTCGGCGGCCTCCCCGCCATCGCCAAGGTCCGGAGTTC CGACCCCGGCTCCCGCCTCGAGCTCCGCTTCCGCCCGGAGGACCCCGACTGCCACCCGAC CTTCGGCGAGCCCCGCGCCTCCACCGGCCTCCTCCTCCGCCTCTCAAGGCCCAAAGGAGG CTCCGCGCCACCGCGTGCCGAGGTGGTGGCGCGCGTCCGGACCGCCTACCATTTCCAAGG CATGGCAGATTTTCAGCATGTCGTCCCAGTTCATGCTGCTCAAGTTAG
Homology of Contig U35_45990 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g34420.1 | 149 | 5e-59 | protein|expressed protein |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |