barSeed - Barley Seed Development Database

Probe CUST_1432_PI390587928

Source Contig U35_30029

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1432_PI390587928	Hv_44K_v2	TCCTGCCGCGACCATTGTGGATGATGCTGAAGGGAAGAAATCCAAGAAGAAAAAGAAGAA	122	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.652	1.508	1.118	0.601	0.204	0.185
Raw	8194.867	11288.167	7559.850	6195.637	759.673	752.957

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3540.1	969	2e-24	197 - 256	100	60 / 60	minus	ABC26236
JLOC1	JLOC1_2128.1	4175	8e-25	709 - 768	100	60 / 60	plus
Harvest21	ABC29677	369	3e-25	123 - 182	100	60 / 60	plus
Harvest35	U35_30029	369	3e-25	123 - 182	100	60 / 60	plus

Contig Sequence (369 bp)

>U35_30029 369 Hv_44K_v2
AAGGGAGGGTTTACTGTGGACGACGAGGACATTGACAAGCTCCTTGCAGAGATCGAGGAC
CGGCCTGCTGCCGCTGACGAGCCCGAGCCCAAGGCAGCCAAGGCAGAGGATGCCGTGGCT
GCTCCTGCCGCGACCATTGTGGATGATGCTGAAGGGAAGAAATCCAAGAAGAAAAAGAAG
AAGAGCGGAAGGACAGCACAGGAAGAGGAAGATTTGGACAAGCTTCTTGCCGAGCTCGGT
GAAGGCCCAACACCGGCACCGGACAAGGAGAAACCATCCCAGGCACCGCCTTCCGCTCCA
GCACTGAAGGAAGATGCTGAAACTGCGGAGGATGCTAATGCGGAGCATAAGGCCGGGGAA
GGAGAGGTA

Homology of Contig U35_30029 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None