- Probe CUST_14328_PI390587928
- Source Contig U35_12129
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14328_PI390587928 | Hv_44K_v2 | GTCGAGGATCTTAGATGGATTTGCCACACGTATATTTATTTGGATTTGGATTTGGATTAA | 362 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.927 | 3.372 | 0.595 | 0.467 | 1.070 | 0.953 |
| Raw | 30.124 | 32.742 | 4.065 | 3.358 | 2.665 | 2.631 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_39775.1 | 2013 | 1e-23 | 1902 - 1959 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC26387 | 437 | 3e-25 | 363 - 422 | 100 | 60 / 60 | plus | ABC26387 |
| Harvest35 | U35_12129 | 437 | 3e-25 | 363 - 422 | 100 | 60 / 60 | plus |
Contig Sequence (437 bp)
>U35_12129 437 Hv_44K_v2 GCACGAGGACGGGATCATGCTCTGGACCGCCATGGACGCCAACGCCACCTGCTACCAGAT GTGCCTCACCGACGGCAACTTCACCAACCTGCCCGCCGGGGACGTCGTGGACCGGCTGCT CGGGGAGTGGCAGACCAGGGAGGTGCTCGGCGCCACCAACGACCGCGGCTCCTTCAACTT CAGCGCATTCCTCGGGGAGTACAAGCTGTCCGTCACCTACCTCAACTCCTCCGCCGAGGG CACCTTCTCCCTCGCCCGCAGCGACGACACCAAGCACATCACCATCCGTCTCCAGCCATG ATTTGATTGATTTATACTCCCATGCATGCATCCAGTTGAAAACCATGCATGGTTAACTAA TAGTCGAGGATCTTAGATGGATTTGCCACACGTATATTTATTTGGATTTGGATTTGGATT AAAAAAAAAAAAAAAAA
Homology of Contig U35_12129 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g23924.2 | 481 | 2e-53 | protein|glycosyl hydrolase family 10 protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g04640.1 | 480 | 1e-54 | |
| Arabidopsis v10 | None |