barSeed - Barley Seed Development Database

Probe CUST_14321_PI390587928

Source Contig U35_24107

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14321_PI390587928	Hv_44K_v2	TCAGAGGGAGGGTCGTCAGATCAGAACTTGCTCAAGCCTTGTGAAACTGCTAACGGAAAT	935	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369227	1422	3e-21	1335 - 1391	98	57 / 58	plus	ABC13982 ABC19199
JLOC1	JLOC1_50840.1	392	6e-21	100 - 155	98	56 / 57	plus
Harvest21	ABC19199	995	3e-25	1 - 60	100	60 / 60	minus	ABC19199
Harvest35	U35_24107	995	3e-25	936 - 995	100	60 / 60	plus

Contig Sequence (995 bp)

>U35_24107 995 Hv_44K_v2
CGGGCACCAGGGGCGTCCGCGTCGCCCTGTTCTCGACTTTCTCGGCCGCGGTGTTCGCTC
TCCGGCTGCACGTGCCCAAGCTGATCGACGATGGCGTCCTCGACGAATGTGCGAACGTGA
AGAGGAACGTGACGATCCAGCTGAGCCCCAAGATGCCGCCGATCGAGGCAGCTGAGTTGC
CATGGGTCTGCCTGAGCAGCTTGCCGGACAGACGTAGGGTGATCATTCAGATCTTGCAGA
AGACCCACCCGATGATACCGCTGGCCGCCGCCATCATCTGTAACACGTTCGAGCAGATCG
AGTCGGAGGAGCTGGATCTCGTCCCCAACGCGCTGCCCGTCGGACCCCTGGAAGCGCCGG
CTGCGTCGAGGTCTGCCGGCCAACTCTGGCAAGAAGACTCGGCCTGCCTCCCCTGGCTCG
ACGCGCAGGCCCGCGGCTCTGTCATCTACGTGGCGTTTGGGAGCTTCACCGTCTTCGACG
CGGCGCGGTTCCTGGAGCTCGCCGATGGGCTGGAGCTCACCGGCCGGCCCTTCCTGTGGA
CGGTCCGGACGAACTTCACCACCGGAATCGGAGAAGATTGGCTCGACGCATTCAAGCGCC
GCGTGGAGGGCAAAGGGCTGGTCGTGGGCTGGGCGCCACAGCAGCGCGTGCTCTCGCACC
CCTCCGTCGCCTGCTTCGTGTCGCACTGCGGGTGGAACTCCACCATGGAAGGGCTGCGAC
ACGGCGTGCCGTTCTTGTGCTGGCCTTACTTCGCCGACCAGTTCTGCAACCAGAGCTACA
TCTGCAACGTGTGGGGCACCGGCGTCAAGATCCACGCCGACGAGAGAGGGGTCGTCACCA
AGGAGGAGATCAAGAACAAAGTCGCGCAGCTGCTGGGTGACGAGGGGATAAAGGCTAGGG
CCGCGATATGGAAGGACGCGGCCTGTACGAGCATCTCAGAGGGAGGGTCGTCAGATCAGA
ACTTGCTCAAGCCTTGTGAAACTGCTAACGGAAAT

Homology of Contig U35_24107 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55040.1	458	1e-171	protein\|UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g08145.1	463	0.0
Arabidopsis v10	AT3G02100.1	464	1e-78	UDP-Glycosyltransferase superfamily protein \| chr3:368840-370484 REVERSE LENGTH=464