barSeed - Barley Seed Development Database

Probe CUST_14320_PI390587928

Source Contig U35_24108

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14320_PI390587928	Hv_44K_v2	CCAATCTATGTTGACGTTCCAAGATAAAGGCTAGATTTTAAAATAGTCTTGCTACACTTC	556	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.223	1.287	1.265	1.019	0.337	0.401
Raw	122.976	208.641	177.525	225.056	25.530	33.563

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC19057	684	3e-25	557 - 616	100	60 / 60	plus
Harvest35	U35_24108	778	3e-25	557 - 616	100	60 / 60	plus

Contig Sequence (778 bp)

>U35_24108 778 Hv_44K_v2
GGAGAAGTTTTACACAGCAGTTCCCTGGTACATCTGAAAATAAAAAGAAAGGTGTCTAAG
CCTAATGATGCGACTGATGCAGAAGATGCCAGAACAGATATTGTCAGAACATGAGGGAGG
GTCTGTAATGGCAGATGTACGACAAATGTTGCTTTGCTTCGAGTATCTACCTAGAGGGAG
TTTTGATAAGTATATCACTGGAGTATCTTGTGTACTTGAGTGGACAGAGCGCTATCGGAT
CATCCAAGAAATCTGTGAAGGCTTACATTATCTCCATGTTGAGCGGCGTATCGTCCACTT
AGATCTTAAGCCTACAAATATATTGTTGGATGATAAAATGATCCCGAAAATTGCCGATTT
CGGTCTCTCAAGGCGCTTCATTGAAAAGCAAACCCAAATTTTTACTGCCGAAGTGATGGG
AACTTTGGTGTATATGGCACTAGAATTTCTCACAAATGGACAAATTACACTCAAGTCAGA
CATATATAGCCTTGGTGTTATAATCACAGAGATACTGACGGGACAGAATGGATATCATGA
TGTTGAGCATGTAAGACCAATCTATGTTGACGTTCCAAGATAAAGGCTAGATTTTAAAAT
AGTCTTGCTACACTTCTATTTGGTATAATATTATTTCCTTTGTAGGTATTGCATGATGTT
GAGAAATGCAAAGAAGCCTAGTTAGTAAAAGTTATAAATATTATACTTACTTTTAGAAAG
ACTAGATTTCAAATAATAATGCTCCCCTTTTTATTGGTACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None