barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_14316_PI390587928Hv_44K_v2TTGCACTTGATGGACTTCTGGAGTATAACTACAAAACACGAGACACTGCAATAAGTTACA475GeneList: cyan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.7261.1691.1600.7010.6520.473
Raw 41.03637.68537.04829.22211.1359.108



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36686919473e-21491 - 5509758 / 60plus ABC13198
MLOCMLOC_14140.114753e-2151 - 1109758 / 60plus None
JLOC1JLOC1_9639.29362e-2151 - 1109758 / 60plus
JLOC1JLOC1_9639.19262e-2152 - 1119758 / 60plus
Harvest21ABC221525383e-25476 - 53510060 / 60plus
Harvest35U35_121325353e-25476 - 53510060 / 60plus



Contig Sequence (535 bp)

>U35_12132 535 Hv_44K_v2
TTTCGGCCCGTCTTCCACCTCTCCGCCGCCGGCCGCCGCGCGAGCGCGACCATGGCGCGC
ATCGTATCGCGAGCCCTTCCGTTCGCCTCGCGCTCGCACCTCCATATCCCACCGCCCCTC
CGCGGCGCGGCGCTGCTCAGCTCCACGCCGCTCCTCCCGCACCTCCCCGCGGCGGCGTCC
ACGGCCTCTCTGCTCTCCTGGCGGGGGTTCACGCCCACCCCCGAGCCCTCCCGCTTTGCG
CAGCCTTTCGCGGGATTCCTCGCTGGCATCCGCGGCTTCCGAAGGGCGCGGCGCGGGCAG
GCGGCGGCGAAGCGAGAGCCGCCGCAGGACCCTGCGCCCCCGCCCCCGCCCCCGCCCAAG
GAGAGCGAGATAGAGCTCTGCGCCCGCATCAGCGTCGAGGATGATTTGCCCGACGACATC
GAAGTGCTGAACATAATAGAAATCATGAAATTAAATGTTCCAATGGCGATGAAAATTGCA
CTTGATGGACTTCTGGAGTATAACTACAAAACACGAGACACTGCAATAAGTTACA



Homology of Contig U35_12132 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None