barSeed - Barley Seed Development Database

Probe CUST_14310_PI390587928

Source Contig U35_12138

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14310_PI390587928	Hv_44K_v2	GAGCTTCTCAAGTATCATGCTAGGGTTCTCTATATTGACATTGATGTTCATCATGGAGAT	603	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60936.1	2714	2e-24	1995 - 2054	100	60 / 60	minus	ABC18372
MLOC	MLOC_60936.2	2467	2e-24	1633 - 1692	100	60 / 60	minus	ABC18372
MLOC	MLOC_60936.3	3037	2e-24	2207 - 2266	100	60 / 60	minus	ABC18372
MLOC	MLOC_60936.5	2888	2e-24	1967 - 2026	100	60 / 60	minus	ABC18372
MLOC	MLOC_60936.4	1889	2e-24	1042 - 1101	100	60 / 60	minus	ABC18372
JLOC1	JLOC1_39772.11	1857	8e-25	720 - 779	100	60 / 60	plus
JLOC1	JLOC1_39772.10	2416	8e-25	690 - 749	100	60 / 60	plus
JLOC1	JLOC1_39772.9	2382	8e-25	690 - 749	100	60 / 60	plus
JLOC1	JLOC1_39772.8	1763	8e-25	667 - 726	100	60 / 60	plus
JLOC1	JLOC1_39772.7	1797	8e-25	667 - 726	100	60 / 60	plus
JLOC1	JLOC1_39772.6	1793	8e-25	690 - 749	100	60 / 60	plus
JLOC1	JLOC1_39772.5	1831	8e-25	694 - 753	100	60 / 60	plus
JLOC1	JLOC1_39772.4	1804	8e-25	667 - 726	100	60 / 60	plus
JLOC1	JLOC1_39772.3	1808	8e-25	671 - 730	100	60 / 60	plus
JLOC1	JLOC1_39772.2	2420	8e-25	694 - 753	100	60 / 60	plus
Harvest21	ABC23947	666	3e-25	604 - 663	100	60 / 60	plus
Harvest35	U35_12138	666	3e-25	604 - 663	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_12138 666 Hv_44K_v2
GCGCACGACCGCCCTCAACTTCCGCCGCCGCCTCCGCCTCCGCCGTCGCGAACTCGGTGT
CGGCTTCCCCGGCGCCCCCCATTCAGCGCCGCCTCCGCCTGCAGAGGCAGGCGGCTGCTG
GAGAGCGAGGTCATGTTGGAGAAAGACAGGATATCCTATTTCTACGATGGGGATGTGGGT
AATGTGTACTTTGGGCCAAATCACCCGATGAAACCGCATCGCCTTTGCATGACACATCAT
CTTGTGTTATCATATGAACTTCACAAGAAAATGGAGATATATAGACCGCACAAAGCATAT
CCAACGGAGCTTGCGCAGTTCCATTCTGCTGATTATGTGGAGTTCTTGCACCGGATAACT
CCTGATACCCAACACTTGTATGCAAGTGAATTAACTAGATACAATCTTGGAGAGGACTGC
CCAGTATTTGATGATTTGTTTGAGTTCTGCCAAATTTATGCCGGGGGAACTCTAGATGCG
GCTCGAAGACTAAATCATAAAACATGTGATATTGCTATTAATTGGGCTGGTGGGCTGCAT
CATGCAAAGAAGTGTGAGGCGTCAGGCTTCTGCTACATTAATGACCTGGTTTTGGGAATT
CTGGAGCTTCTCAAGTATCATGCTAGGGTTCTCTATATTGACATTGATGTTCATCATGGA
GATGGA

Homology of Contig U35_12138 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g33480.1	385	1e-91	protein\|histone deacetylase, putative, expressed
Brachypodium v1_2	Bradi5g09190.1	431	1e-131
Arabidopsis v10	AT3G44680.1	426	1e-113	\| Symbols: HDA9, HDA09 \| histone deacetylase 9 \| chr3:16226769-16229752 REVERSE LENGTH=426