barSeed - Barley Seed Development Database

Probe CUST_14307_PI390587928

Source Contig U35_24111

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14307_PI390587928	Hv_44K_v2	GGTTTATCATCCATTATACTACTTCTAGAGAAATCTCCACCACTTTACCATGCTTATGTA	639	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367917	3159	2e-24	1617 - 1676	100	60 / 60	plus	ABC16267
MLOC	MLOC_18196.2	1265	2e-24	585 - 644	100	60 / 60	minus	ABC16267
MLOC	MLOC_18196.4	1887	2e-24	533 - 592	100	60 / 60	minus	ABC16267
MLOC	MLOC_18196.1	2738	2e-24	607 - 666	100	60 / 60	minus	ABC16267
MLOC	MLOC_18196.3	2371	2e-24	585 - 644	100	60 / 60	minus	ABC16267
JLOC1	JLOC1_12586.3	1941	8e-25	1283 - 1342	100	60 / 60	plus
JLOC1	JLOC1_12586.2	1766	8e-25	1108 - 1167	100	60 / 60	plus
JLOC1	JLOC1_12586.1	1815	8e-25	1157 - 1216	100	60 / 60	plus
Harvest21	ABC20384	703	3e-25	640 - 699	100	60 / 60	plus
Harvest35	U35_24111	703	3e-25	640 - 699	100	60 / 60	plus

Contig Sequence (703 bp)

>U35_24111 703 Hv_44K_v2
GCAAAATTCTTGGCCTATACAGACAAACCTGATGATGGCTTTCGGTTTGTTGATGACCAC
AGACACGATATGCCCACGCCACAGAACTGGGCTCTTGAAGGCTTCGAAAGAGTCGATGTC
AACCAGGCTGATATAGCTCCTCTAATGGCTACACTTGTTGGTCTGTCATGCCCTTTGAAT
TCTGTGGGGAACTTACCTTCTCATTATCTGAAGTTAAGCAAGTCTGATGAAGTTGAAGCA
GTTCTGGCCAACACAAAACAAATTCTTAACCAGTTTCTCCAGAAGTCAGAGCAGAAGCAA
TCCAGTTCACTCTATTTCAAGCCTTTTAAACCACTGGTGAACTATTCGTCTGTCCTCGAT
CGAATCGAAGATCTAATATCTGCAAGGGACTACAAAACTGCCATGAAGTATTCTGAAGAG
CTACGTAGTATGGCTCTTGCTGGCCTCCATTATTTCCAAACATACGACTGGTTCATGTTA
ATGACAACAATTACCCTTGGATACATTGGATGGATGGCAAACCTCATTCTACATGTGCTA
CAGTCTTATACAACATTTCCTGCTAATCTTCTAAAGAGGACTCAGGTGTATCCCAAGAAT
ACCTCCATGAAAGTATACATAGGTGGATGCTTGTTCATGGGTTTATCATCCATTATACTA
CTTCTAGAGAAATCTCCACCACTTTACCATGCTTATGTATTTA

Homology of Contig U35_24111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37050.1	914	3e-69	protein\|phosphatidylinositolglycan class N family protein, expressed
Brachypodium v1_2	Bradi3g47034.1	979	9e-137
Arabidopsis v10	AT3G01380.1	993	2e-79	transferases;sulfuric ester hydrolases;catalytics;transferases \| chr3:144288-149828 REVERSE LENGTH=993