barSeed - Barley Seed Development Database

Probe CUST_14305_PI390587928

Source Contig U35_24114

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14305_PI390587928	Hv_44K_v2	TAACTAGTGATAGATTACCCGTCAAATGCAAGCAAGTGGCGTTTGAAGTTGTCTAGTAAA	410	GeneList: orangered4 MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.514	2.415	1.259	0.717	0.206	0.276
Raw	114.103	180.088	77.714	72.306	7.026	10.386

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369260	1697	6e-24	1523 - 1581	100	59 / 59	plus	ABC19876
MLOC	MLOC_37544.4	1412	6e-24	130 - 188	100	59 / 59	minus	ABC19876
JLOC1	JLOC1_24314.7	1308	3e-24	1075 - 1133	100	59 / 59	plus
JLOC1	JLOC1_24314.6	1227	3e-24	994 - 1052	100	59 / 59	plus
Harvest21	ABC19876	484	3e-25	15 - 74	100	60 / 60	minus	ABC19876
Harvest35	U35_24114	484	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (484 bp)

>U35_24114 484 Hv_44K_v2
AGCATGTAGATGCTAACAGCCCAGTTAATAGAGATATTCTTCTAAGAATTGTTTACAACA
AAATCTATGATTCAGCGAGGAAGCTTCAGGTAGGCGGTGGTGCTCTTATTTGGCAGTTGA
TGGTCGAAGGAACACATATGTACCACGACGATTTCTCCCTGGTGGCACGGGATCATCCCT
CGACCTATAAGTTGATAACAGAGCAGTCTTGTCGACTGCAAACGCTGTACAAGAATGACA
GAGACCCTGACTGGCAATGCCCGATACAGCCCTAGGAATTTTACTGCCATTGATACCGGG
AAATCCTGGTTCAACAAACAGAAACTCGTCTTCAGCATTATGTTGAGAGCAAGACTGCCT
ATAGAAGCGAACAGCTGACTGATAGGATGTGTATAGCAACAGCACGTTTGTAACTAGTGA
TAGATTACCCGTCAAATGCAAGCAAGTGGCGTTTGAAGTTGTCTAGTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_24114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None