barSeed - Barley Seed Development Database

Probe CUST_14302_PI390587928

Source Contig U35_24117

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14302_PI390587928	Hv_44K_v2	GACATCATTAATGCTGCATTTGGGCCGAAACATGAGGATTCCATTGAGATCCTTCAGTGC	660	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.957	1.459	2.012	1.910	0.735	0.564
Raw	81.230	203.049	232.599	350.900	47.401	39.425

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370755	2107	2e-24	1579 - 1638	100	60 / 60	plus	None
MLOC	MLOC_57884.1	1496	2e-24	917 - 976	100	60 / 60	plus	None
JLOC1	JLOC1_37590.2	1391	8e-25	903 - 962	100	60 / 60	plus
JLOC1	JLOC1_37590.1	1511	8e-25	903 - 962	100	60 / 60	plus
Harvest21	ABC18626	723	3e-25	661 - 720	100	60 / 60	plus
Harvest35	U35_24117	723	3e-25	661 - 720	100	60 / 60	plus

Contig Sequence (723 bp)

>U35_24117 723 Hv_44K_v2
GCCGGGCTGGGTCGCCATGAGGAGGCATTGGAGCAGAATGAGCTTGTTAGGATGGAGTAT
GAGAGGTTGGGGATGGATGCAGAGCTTTCGCTGGTTGAAATCGACGGGGCCAGCCTGCGT
ATTATGTTGGGGAGAACAGAGGCTGCGATGAATGACCTTAAGAAGGTGATGAAGCGGGCT
AGCAAGGATAGCGAGGAGCGTGCGCTAGCGTTTGTCGCGATGGCGAAGATTTTGTGCTCC
GAGGAGAGGTCCAGTGACTCGAGACGGTGCTTGGAGATTGCTCGTGAGACTCTTGATGCA
AAGCGTTCTGTAAACACTGAACGGGTCGCTGGGGCATACACCGAGATATCGATGTTGTAT
GAGTCAATGAATGAATTCGAGATGTCTTTGTGTTTGATGAAGAAAACACTTGCGTTTCTT
GAGGGTGCCTCAGGGATGGAGCACATTCAGGGGAGCATCTCTGCAAGGATGGGTTTTCTC
CTCCTGCTGACAAAACGAATTGATGAGTCTGTTCCTTTTCTGGAGAAAGCTGTTGAGAAG
TTGAAGAACTGCTTTGGACCAGCGCATTTTGGGTTAGGATTTGCTTACAAGCATCTGGGC
GAAGCGTATATTGAAATGGGCCAACCGGAATCATCTATTAAGTTCTTTGAACTTGCAAGT
GACATCATTAATGCTGCATTTGGGCCGAAACATGAGGATTCCATTGAGATCCTTCAGTGC
ATT

Homology of Contig U35_24117 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g05540.2	557	4e-99	protein\|tetratricopeptide repeat containing protein, putative, expressed
Brachypodium v1_2	Bradi1g75080.1	551	5e-117
Arabidopsis v10	AT2G31240.1	617	2e-61	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr2:13317570-13319518 REVERSE LENGTH=617