barSeed - Barley Seed Development Database

Probe CUST_14295_PI390587928

Source Contig U35_12144

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14295_PI390587928	Hv_44K_v2	GCTCTACCACCATTCTGTTGCTGATGCTTTGCACCATGAATAAAAATCAATCTGCTTAAA	633	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.064	1.758	0.974	0.875	0.496	0.667
Raw	1222.853	1612.510	797.217	1151.208	222.855	326.545

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34498.4	1863	2e-23	1727 - 1784	100	58 / 58	plus	ABC25729
JLOC1	JLOC1_22253.1	1893	1e-23	1740 - 1797	100	58 / 58	plus
Harvest21	ABC25729	705	3e-25	13 - 72	100	60 / 60	minus	ABC25729
Harvest35	U35_12144	705	3e-25	634 - 693	100	60 / 60	plus

Contig Sequence (705 bp)

>U35_12144 705 Hv_44K_v2
GCTGTGATCAACCGGGCAACTTCGATGAAGGAAGGAGTGCCGGCCCCGGAGGCGCCAAAG
GACACTTCAAGCTCAGCAGCAACCCTCAAGAGACCTGTTTCGAGTTCGAGCCGGTTCAGT
TTCCTGCGAGGTTTCGCCAGTTGATTGCAAGCACACGGCGATGATATACTACATATGGCA
CTGCCTTTGCTGTGGTTGGTTTGTGCCAAAAGACAGACGACACCCAGTAACCTTTTTTTA
CTTGTATAACATTTATCTATCTATCTAGCTAGATATGCAGGCAAGGTAAGGTAAGGTAGA
AAACATGGCAGTTGGCAAAGGAAGGGGAATTTGCTTTGCCAAACGAATTTTTGTAGAAAA
CAAAATATGTATGGTGGAGAGACAAGGGGCAATGGTATGATGGCAAGAGATGCGCTACGA
ACACTGTCATCTACTCGCGTGGTTAATTTTGGCGAAGCAAGGATGATGTATACGGGGTTT
CTGACCTCGATATCTCTGGATATTACATGTAGCTGCATCTTCAAGATGCAGATGAGAACA
TTATCTTGTTCGAGTCTAGCGAGTCATGTAGCAGGGGGCTGCCTGCTACTGTAGCGGGCA
AGCAAGAATGTGGACCTGGTGGCTGGTGGTCTTGCTCTACCACCATTCTGTTGCTGATGC
TTTGCACCATGAATAAAAATCAATCTGCTTAAAAAAAAAAAAAAA

Homology of Contig U35_12144 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None