barSeed - Barley Seed Development Database

Probe CUST_14287_PI390587928

Source Contig U35_24122

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14287_PI390587928	Hv_44K_v2	GCGAGTGGGTGTTGTTCATTTTTCTATGGAAATAAAATGGATAGATCTTGGGACAAAAAA	1009	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.604	2.415	1.288	0.480	0.076	0.063
Raw	35765.900	36121.833	17095.533	9541.597	583.491	510.468

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_48938.1	1397	1e-22	1257 - 1312	100	56 / 56	plus
Harvest35	U35_24122	1079	3e-25	1010 - 1069	100	60 / 60	plus

Contig Sequence (1079 bp)

>U35_24122 1079 Hv_44K_v2
ATTCTCTCCGTCTCCATTTCCAGCGACGCCGCGATGCAGGGTCGTCAGGCCGGCACGGCG
CTCCTGCTCCTCCTCGCCGTCGTCGTCGCGGTGCTCCCCGCGCCGTCGCTCGGCTGGGGC
GTCGACGGGCACCTCATCGTCTGCCAGATCGCGCAGGCCCGGCTGAGCGACGCGGCGGCG
AAGGCGGTGGACGACCTGCTGCCGTCGGACGCCGGCGGCAACCTCAGCAGCCTCTGCTCC
TGGGCCGACAAGGTGAGGTTCAGGTACCACTGGTCGGCGCCGCTCCACTTCATCGACGTC
CCGGACAACGAGTGCAGCTACTCCTACGACAGGGACTGCAAGGACGAGGAGGGCGTCAAG
GGCCGCTGCGTCGCCGGCGCCATCAACAACTACACCTCCCAGCTCCTCACCTACGGATCA
TCATCGCCGTCGCCATCTTCTAAATCTTCCTCTTCCGGTCAATATAACCTGACGGAAGCG
CTCTTGTTCCTCTCACACTTCATGGGAGACATCCACCAGCCGCTGCATGTGGGGTTCGCC
TCTGACAAAGGAGGCAACACGATCGACGTCCACTGGTACAGGAGGAAGACTGAACTCCAT
CATATCTGGGACGTGAACATCATTCAGACGGCGGAGAAGGACTACTACGACGAAGACGCG
GGCAAATTCGTCGATGCGTTGAACAAGAGCATAAAGGGGGCGTGGTTAGACAAAGTGCAG
GAATGGGAGGAGTGCGCCAAGAACCAGACGGCGTGCTCGGACATATATGGGTCGGAGAGC
ATCGCTGCAGCATGCGACTCGGCGTACAAGAACGTGACAGAGGGTTCGACGCTGGGCGAT
GAGTATTTCGGAAGCAGGCTGCCGGTGGTCAAGTTGAGGCTGGCGCAAGGCGGCGTCCGA
TTGGCAGCTACGCTCAACAGGATATTTGGTGAATCCAAGCCTTAGTGATTATCATGTCGG
GTTTTATAGACTGCAAGTGATTTTTGTAAATTGGCACAGATGATGCCTGGCGAGTGGGTG
TTGTTCATTTTTCTATGGAAATAAAATGGATAGATCTTGGGACAAAAAAAAAAAAAAAA

Homology of Contig U35_24122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03740.1	292	2e-142	protein\|nuclease PA3, putative, expressed
Brachypodium v1_2	Bradi2g01967.1	296	2e-158
Arabidopsis v10	AT1G68290.1	290	4e-129	\| Symbols: ENDO 2 \| endonuclease 2 \| chr1:25596718-25598264 FORWARD LENGTH=290