barSeed - Barley Seed Development Database

Probe CUST_14285_PI390587928

Source Contig U35_24124

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14285_PI390587928	Hv_44K_v2	TATTTAGTTTCTGTGTAGAATGATGTCTTTCAGCCCACCTGGACAAGCAGATCCTATTCT	730	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.776	6.812	1.784	0.679	0.784	0.794
Raw	67.678	105.107	21.072	12.462	3.399	4.607

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40241.2	1703	2e-24	1600 - 1659	100	60 / 60	plus	ABC21250
JLOC1	JLOC1_26297.1	1774	8e-25	1618 - 1677	100	60 / 60	plus
Harvest21	ABC21250	808	3e-25	731 - 790	100	60 / 60	plus	ABC21250
Harvest35	U35_24124	808	3e-25	731 - 790	100	60 / 60	plus

Contig Sequence (808 bp)

>U35_24124 808 Hv_44K_v2
GGTTATCCCATATGTCATCCTTGCTGAGAAGTTGGGACGTCTCGCCGTGCAACTAGTGGC
TGGTGGCAGTGGGATCAAGGCAGTCAAGGTTGTCTACTCATCGGCTAGAGACCCGGATGA
CTTGGACACAAGAATTCTCCGTGCCATGGTCACGAAAGGCATCGTCGAACCCATTTCAAG
TGCATTTGTTAACATGGTGAATGCTGACTATGTTGCCAAGCAAAGAGGGCTCCGGATAAT
CGAGGAGCGGATTCTCCTCGACGGCTCCCCTGAGGTCCCTATAAACTCTATCCAGGTCCA
GCTTGCCAATGTGGAGTCCAAGTTCGCCGGTGCGTTATCTGACGACGGTGATATCAGAGT
GGAGGGGAAGGTTAAGGATGGCACGCCGCATCTCACACTTGTCGGGCCTTTCAGTGTCGA
TGTTAGCCTTGAGGGCAACCTGATACTCTGCCGGCAAGTCGACCAGCCGGGCATCATCGG
CAAGGTGGGATCGATTCTCGGGACGATGAACCTGAATGTCAACTTTATGAGCGTTGGAAG
GATTGCTCCAGGGAAGCAGGCCATCATGGCCATTGGGATTGATGAGGAGCCTGAGAAGGA
AGCACTCAAGTTGATCGGGGAAACGCCATCGGTGCAGGAGTTTGTCTTTCTTAAGCTTTA
GAGAAATGTAGGTTGATTTGTTTGTAACATCTCCTGCTTTACTAGTATGATGAGTGATTT
TTGCAAAGCTTATTTAGTTTCTGTGTAGAATGATGTCTTTCAGCCCACCTGGACAAGCAG
ATCCTATTCTNAAAAAAAAAAAAAAAAA

Homology of Contig U35_24124 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g44460.1	614	3e-129	protein\|D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g31270.1	619	2e-135
Arabidopsis v10	AT4G34200.1	603	3e-108	\| Symbols: EDA9 \| D-3-phosphoglycerate dehydrogenase \| chr4:16374041-16376561 REVERSE LENGTH=603