- Probe CUST_1427_PI390587928
- Source Contig U35_42002
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1427_PI390587928 | Hv_44K_v2 | AATGAGCTACAATTGGGTGACAATCAAGAGATCAAAGAGTCAGCTGTGGCCAAGCCAATC | 406 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.081 | 0.155 | 1.694 | 2.337 | 1.029 | 1.051 |
| Raw | 7.905 | 24.223 | 249.286 | 522.280 | 85.760 | 93.400 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372063 | 2285 | 2e-24 | 945 - 1004 | 100 | 60 / 60 | plus | ABC28882 |
| MLOC | MLOC_72962.6 | 1862 | 2e-24 | 1218 - 1277 | 100 | 60 / 60 | minus | ABC28882 |
| MLOC | MLOC_72962.3 | 2109 | 2e-24 | 1476 - 1535 | 100 | 60 / 60 | minus | ABC28882 |
| MLOC | MLOC_72962.5 | 1788 | 2e-24 | 1259 - 1318 | 100 | 60 / 60 | minus | ABC28882 |
| MLOC | MLOC_72962.7 | 1913 | 2e-24 | 1194 - 1253 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_72962.1 | 2065 | 2e-24 | 1466 - 1525 | 100 | 60 / 60 | minus | ABC28882 |
| MLOC | MLOC_72962.2 | 2083 | 2e-24 | 1484 - 1543 | 100 | 60 / 60 | minus | ABC28882 |
| MLOC | MLOC_72962.4 | 1994 | 2e-24 | 1361 - 1420 | 100 | 60 / 60 | minus | ABC28882 |
| JLOC1 | JLOC1_48562.4 | 1950 | 8e-25 | 560 - 619 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48562.3 | 1932 | 8e-25 | 560 - 619 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37345 | 546 | 3e-25 | 407 - 466 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42002 | 546 | 3e-25 | 407 - 466 | 100 | 60 / 60 | plus |
Contig Sequence (546 bp)
>U35_42002 546 Hv_44K_v2 GGTTCCTGGGGGCACAGTGCGTGCCAGATTTGTGCTAAAAGAGCGGTGTGCCTTCGGTCA GAGCTTCAAACTGGTCGGTGACGTCCCGGCGCTCGGCCACTGGGAACCGGCAAACGCGGT CGCTTTGGATTGGTCGGAAGGTCACAATTGGACAGTAGAGAAAGATTTGCCTGCCAACAG GTCGATTGAGCTCAAGTTCTTGCTGCGAGAGTCCTCGGGAAAGTTCCACTGGCAGAAAGG ACCTAATAGAATCCTACAGACAGGTGAAACCACAAAGACTTTGGTGGTCTACGAAGATTG GGGTAGTGCGAAGAATCAGAAAGTAGCAGAGGAGGACACGCCGGTTGAAATGATGGACAC AGTTGTTGCCGAGGATGATCAAGGCAGAAATGGTGGTGTTTCGGCAAATGAGCTACAATT GGGTGACAATCAAGAGATCAAAGAGTCAGCTGTGGCCAAGCCAATCCCTCGGGGTGGAGC TTTCGGGCCGGGACGGGTCGCGTACGGCATGCGTGGGCCGCAGCGGGTCGTTGGTGCCGG CCTGGC
Homology of Contig U35_42002 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g37450.1 | 374 | 2e-53 | protein|starch binding domain containing protein, putative, expressed |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |