barSeed - Barley Seed Development Database

Probe CUST_14272_PI390587928

Source Contig U35_12150

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14272_PI390587928	Hv_44K_v2	TTAGTGTTGATATGTGGGCAGAACATACTCGAGGCAGCACCCAAGGATAAAGATCCAAAG	895	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.539	1.095	1.274	0.822	0.562	0.401
Raw	119.429	127.262	132.933	127.163	31.940	25.747

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18720.1	1222	7e-23	484 - 543	98	59 / 60	plus	None
JLOC1	JLOC1_12960.1	999	4e-23	507 - 566	98	59 / 60	plus
Harvest21	ABC38436	487	3e-25	417 - 476	100	60 / 60	plus
Harvest35	U35_12150	966	3e-25	896 - 955	100	60 / 60	plus

Contig Sequence (966 bp)

>U35_12150 966 Hv_44K_v2
GCGAATTGGGCCCTCTGATGATGCTCGAGCGGCCGCTGGATCCGAGCTTTACCGAGAGAG
AGTGGTAAGAGCGATTGCCCATGAGTTACGCGTGCCATTATTGGTTCTGGACAGCAGTGT
TCTAGCTCCATATGATAATGGTGAAGACTGTTCAGAGAGTGAGGAGGAGAATGGTCAGGC
GGAGTCAGAAGATGAAGGCTCAGAATCGGAAGGGGAAGATGAAGATTATAATGAAGCTAA
GTCTGGTGAAAGTGATGACGAGGAAGTTGTCAAATCAGTGGAGAACCTCAAGAAGTTAGT
TCCGCGCACTCTTGAGGAATTTGCCAAGAGGGTTGTTAGTGCGCAAGAAAATTCTTCAGC
AGCAGAAGAATCCACCACCGAGTCGCCTGAAGAAGATAAAAGGCCTCTCCAAAAAGGTGA
TAGAGTGAAGTATGTTGGAGAGTCAGTGCTTGTTGAAGCAGATCACAGGATCATTCTGGG
GAAAATACCAACTCAAGAGAGATCAGCAGAAGCCTTTACCTTTGTTAGCGGCAGAACTTT
ATCAAATGGACAGCGTGGCGAGATATACGAGATCAATGGTGATCAAGTGGCTGTTTTATT
TGACCCTCTTGAGGAGAAGCTGGATGATGATAAAAATGATGAAGCTAACAAAGAGCCAGA
TGCTAAACCATCAGTTTGCTGGGTTGACACTCAGGATATTGTGCATGACCATGACACTGA
GGCGGAAGATTGGCATATCGCGATGGAAGCATTTTGTGAGGCACTGCCATCTCTTCAACC
AGCCATTGTTTACTTTCCGGATAGTTCACAGTGGCTTTCTAGGGCAGTTCCAAGATCAAA
TCGCAGAGAGTTTATCGAAAAGGTAGAGGAAATGTTTGACCAGCTTAATGGGCCTTTAGT
GTTGATATGTGGGCAGAACATACTCGAGGCAGCACCCAAGGATAAAGATCCAAAGGCGCT
GGTGTT

Homology of Contig U35_12150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12160.1	974	5e-112	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi1g45297.1	982	1e-123
Arabidopsis v10	AT1G50140.1	1003	4e-63	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:18569921-18578663 REVERSE LENGTH=1003