barSeed - Barley Seed Development Database

Probe CUST_14259_PI390587928

Source Contig U35_24134

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14259_PI390587928	Hv_44K_v2	GAAAAGAAAAGATTTGGGCTTTGTGTTTCTCTTTCCCCATCTTCCTCTCTCCTCTCCTCT	22	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353650	3396	2e-23	4 - 61	100	58 / 58	plus	ABC11901
MLOC	MLOC_56958.1	3650	2e-23	176 - 233	100	58 / 58	plus	ABC11901
MLOC	MLOC_56958.2	3578	2e-23	176 - 233	100	58 / 58	plus	ABC11901
JLOC1	JLOC1_36864.3	3578	1e-23	106 - 163	100	58 / 58	plus
JLOC1	JLOC1_36864.2	3560	1e-23	179 - 236	100	58 / 58	plus
JLOC1	JLOC1_36864.1	3632	1e-23	179 - 236	100	58 / 58	plus
Harvest35	U35_24134	563	3e-25	23 - 82	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_24134 563 Hv_44K_v2
TCGAGCACTGTTGGCCTACTTGGAAAAGAAAAGATTTGGGCTTTGTGTTTCTCTTTCCCC
ATCTTCCTCTCTCCTCTCCTCTCATCGCGCCAACCAACGCAGACGCACCACGCCCCGGGG
CGGACGGAGACCGAGGCCACGCACGCACCAGTGGACGGATTTCTCTTCTCCGCCCGCCGC
CGCCGCCGCCGATTCAGTCCAGCAGCTAGGGTTTCCCCTCCGCCGGAGGCGCTAGGTGCC
GAATGCAGTGATGGACCGATCACCCGCACCCCTCAGCCCACCAGGTTTCGCCGTGCCGCT
CGCCGTCAAGAAGCGGCAGCAGGCGGCGCCAGGTTACAGCAGCAGCAGCCCGTGGGGAGT
CCCTCCGCCAGCACCGCCGCCGGCCACCAACGCCCCCAATGGCCTTCGAGGAGGAGGCGA
CACCAGCATCTTCTCCACATCACTGCCCGTCCTGCCGCATGAAAATTGAACTTCCCTGAC
TCCGCCCATGGCACCCCTTAGATGGACGACGCGTCTGCTAAACTGAAAGACTTCGACGAT
GATCCTCAGGGGAACGACTACCC

Homology of Contig U35_24134 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None