- Probe CUST_14253_PI390587928
- Source Contig U35_36110
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14253_PI390587928 | Hv_44K_v2 | CTTGTCATTTGAGACTAATCTGTTGTTGTCTTCTCTGCTTCTGGATGTTGGGGTTATCTA | 670 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.232 | 0.338 | 0.901 | 1.586 | 1.111 | 1.334 |
| Raw | 50.640 | 118.131 | 274.624 | 721.679 | 185.202 | 242.827 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_67201.4 | 2354 | 3e-21 | 2162 - 2221 | 97 | 58 / 60 | plus | ABC12060 |
| MLOC | MLOC_67201.3 | 1895 | 3e-21 | 135 - 194 | 97 | 58 / 60 | minus | ABC12060 |
| MLOC | MLOC_67201.2 | 2342 | 3e-21 | 139 - 198 | 97 | 58 / 60 | minus | ABC12060 |
| MLOC | MLOC_67201.1 | 2185 | 3e-21 | 173 - 232 | 97 | 58 / 60 | minus | ABC12060 |
| JLOC1 | JLOC1_44340.2 | 2168 | 2e-21 | 1947 - 2006 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_44340.1 | 2165 | 2e-21 | 1944 - 2003 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC12060 | 1662 | 6e-22 | 1453 - 1512 | 97 | 58 / 60 | plus | ABC12060 |
| Harvest35 | U35_36110 | 733 | 3e-25 | 671 - 730 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19336 | 1662 | 6e-22 | 1453 - 1512 | 97 | 58 / 60 | plus |
Contig Sequence (733 bp)
>U35_36110 733 Hv_44K_v2 CTCCTATAGGGCGAATTGGGCCCTTTCCATAATGCTCGAGCGGCCGCTCTGTTCCCACCA TGGAGTTATTTATGGAGCTTCAAGTCATTGGAGATCGAGCAGTAAAAAAGCTTGCATTTT CACATATTGTACACAGCATCAGAAGGATGAATCAGAAGCACAAGAATGAAGCCAAGAATC GTAAACTGCAAGGCATCCTTTTTAAATTAGTACAGGGCGAGGAAGAGTCGAGAGCAAAGA GGGCTTTTACTATCCTATGCGATCTTCACCGTCGAAGGGTCTGGTTTGATGACCGCACAG CAAATGCTATATGCGATGCTTGTTTCCATCCTTCTTCGAGGCTTATGACATCTGCTATTT CATTGCTCATTGGGTATGAAAATGTTGAGCAAGAGGACGATAGTGATGCCAGCAGTGAAG ATGAAGCAATTCAAAACCCAAATATTATACTTAGTAAAGAGGATGTTTACAAGGCAAATC ACAAGGGTACCTCTGCTAGCGGCCGCTGCTGATGTGAGCTGCTGCTGCTTCTGAGTTCTG ACCATGGGAGCTGGAAGAAGGAGGCTGGCCGGCCGGCAACGAAGTCCGGCAATGAACGAA CTTGGGCAAGCCTTCTTCACGGACCTTGTTACATATCCAACATCGTATCCAGAAGCATTT TACGTTGTGGCTTGTCATTTGAGACTAATCTGTTGTTGTCTTCTCTGCTTCTGGATGTTG GGGTTATCTATTC
Homology of Contig U35_36110 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g53770.1 | 838 | 3e-72 | protein|SDA1, putative, expressed |
| Brachypodium v1_2 | Bradi5g22790.1 | 828 | 5e-71 | |
| Arabidopsis v10 | None |