- Probe CUST_1424_PI390587928
- Source Contig U35_42004
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1424_PI390587928 | Hv_44K_v2 | ATGCGTCGCCATGGTCTGCTCGCTCTACTTCCTCGACGTCTACAAGGAGTGGGATGGGGC | 361 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.786 | 0.928 | 0.806 | 1.109 | 1.693 | 2.040 |
| Raw | 12.202 | 20.707 | 17.484 | 38.356 | 18.513 | 26.014 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_8583.1 | 1039 | 2e-24 | 712 - 771 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_5693.1 | 567 | 8e-25 | 263 - 322 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37348 | 457 | 3e-25 | 362 - 421 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42004 | 457 | 3e-25 | 362 - 421 | 100 | 60 / 60 | plus |
Contig Sequence (457 bp)
>U35_42004 457 Hv_44K_v2 GCATGGCCAGCGGCTCCGCCCACGGCCTCTTTTCCGGCACCGCCAGCCCCGCCCAGAACA ACAGCATCGTGTTGGGCGCGGCGGGGCAGGCGGCGCTGTCCGCCAAGTTCCTGGCCATCC TCGTCTGCTTCCTGGTGGCGTTCCTCCTCAACGTGCAGTCCATCCGGTACTACAGCCACA CAGGCATCCTCGTCAACGTGCCGCTCCGGGCGCACCGCCTCCGCCGCCCCGGCCTCGCCG TCGACTACGTCACCTCCACGCTCAACCGCGGCAGCTACTTCTGGTCGCTCGGCGTCCGTG CATTCTACTTTTCATGCCCGGTGTTCCTCTGGCTCTTCGGGCCCATCCCCATGTTCGCCG CATGCGTCGCCATGGTCTGCTCGCTCTACTTCCTCGACGTCTACAAGGAGTGGGATGGGG CGGAGGAGGGCGACGGCCTCGTCGTCGATGATGGAGA
Homology of Contig U35_42004 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g05780.1 | 277 | 2e-76 | protein|expressed protein |
| Brachypodium v1_2 | Bradi3g16960.1 | 259 | 2e-80 | |
| Arabidopsis v10 | None |