barSeed - Barley Seed Development Database

Probe CUST_14243_PI390587928

Source Contig U35_12162

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14243_PI390587928	Hv_44K_v2	GATGTGTTAGATGAAGCTCCACATTGCGATCAAAGTACTGGTACTGATGATGAAATTGCT	401	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.744	1.094	1.409	1.304	1.021	0.806
Raw	87.456	186.524	223.151	285.723	88.780	76.792

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37400.2	4098	2e-24	1947 - 2006	100	60 / 60	plus	ABC16468 ABC41192
MLOC	MLOC_37400.3	3643	2e-24	1905 - 1964	100	60 / 60	plus	ABC16468
MLOC	MLOC_37400.1	3249	2e-24	779 - 838	100	60 / 60	plus	ABC16468 ABC41192
JLOC1	JLOC1_24219.2	2711	8e-25	670 - 729	100	60 / 60	plus
JLOC1	JLOC1_24219.1	2758	8e-25	717 - 776	100	60 / 60	plus
Harvest21	ABC24488	463	3e-25	402 - 461	100	60 / 60	plus
Harvest35	U35_12162	464	3e-25	402 - 461	100	60 / 60	plus

Contig Sequence (464 bp)

>U35_12162 464 Hv_44K_v2
ATGAGAAGGGAGTTAGATCAGATTATGAACCATCTAGAGTTTCTGTTTCATCACAAAGTG
AGGCTCATGGTAATGAAGATAATAGAGCGAAAAGAGCTTCAGTAGTTCCAAAGAAGCTCT
TGAAAAAAGAGACCAAAGAAAATAGCCCCCGCATGGCCAAAAGCAGCACCAGTCGTCAAG
TTCAAAACAAGGTGCAACAGAAAGCACCAAACAACACTCAGAACAGATCACCAAAACCTA
GGAAAGCAGCAGTTAATGCTACTAGAGCAATTGAAGTTAGAAGACCAGATATTGTAAAAG
TCCCTTCTCGCCCTCCATCAGAACTGTCCGAGGAGGCAGATGATATGGTTAGTGAAGCGG
GAACCATGGATGATAGAGGCAATGAAGAGGCCAAAGAGATTGATGTGTTAGATGAAGCTC
CACATTGCGATCAAAGTACTGGTACTGATGATGAAATTGCTGAT

Homology of Contig U35_12162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39490.1	688	2e-57	protein\|expressed protein
Brachypodium v1_2	Bradi3g39880.2	711	1e-75
Arabidopsis v10	None