barSeed - Barley Seed Development Database

Probe CUST_14237_PI390587928

Source Contig U35_12169

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14237_PI390587928	Hv_44K_v2	AGTCTGCCGAGAGGACTCTGGATGCACCGGACCTCGTCGACGACTACTACCTCAACCTGA	513	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.613	1.641	2.077	1.120	0.559	0.432
Raw	30.455	38.962	52.003	42.693	6.872	5.925

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4843.1	2315	2e-24	1071 - 1130	100	60 / 60	plus	ABC10438 ABC19055
MLOC	MLOC_15791.1	1988	9e-22	1154 - 1211	98	57 / 58	minus	ABC19055
JLOC1	JLOC1_3069.1	2049	8e-25	683 - 742	100	60 / 60	plus
JLOC1	JLOC1_10850.1	2021	5e-22	781 - 838	98	57 / 58	plus
Harvest21	ABC21614	573	3e-25	514 - 573	100	60 / 60	plus
Harvest35	U35_12169	573	3e-25	514 - 573	100	60 / 60	plus
Harvest35	U35_37655	738	8e-21	486 - 543	97	56 / 58	plus

Contig Sequence (573 bp)

>U35_12169 573 Hv_44K_v2
GATCCCCGTTTCTCGTCGGCGTGCTGATTTGATTGTTCTTCCTGTTGCGATTTTCTGCTG
TTTGTTTGTTTGTTTGTTTCTTGTTTCTTCTAACCATGGACGCAGGCTCCCACTCGATCT
CCTCCAGCAAGAGCAGCGCCGCCGCCGTGCAGCGCCCGCCGCTCCAGGAGGCCGGCTCCC
GCCCCTACATGCCACCGCTCAGCACCACCTCGCGCAACCCGTCGGCCAAGTGCTACGGAG
ACAGGTTCATCCCGGACCGGTCAGCGATGGACATGGACATGGCGCACTACCTGCTCACGG
AGACCAAGAAGGACAAGGAGAACGCGGCGGCCATCGCGGCGTCCCCGTCCAAGGAGGCCT
ACCGGAGGCTTCTCGCGGAGAAGCTGCTCAACAACCGGACGCGGATCCTCGCCTTCAGGA
ACAAGCCGCCGGAGCCGGAGAACGTGTTTGCTGCCGACACGGTTTCTTCTCACCTACAGG
CCAAGCCGGCCAAGCAGAGGCGCTACATTCCCCAGTCTGCCGAGAGGACTCTGGATGCAC
CGGACCTCGTCGACGACTACTACCTCAACCTGA

Homology of Contig U35_12169 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47180.1	470	7e-79	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi3g52490.1	471	2e-80
Arabidopsis v10	None