barSeed - Barley Seed Development Database

Probe CUST_14236_PI390587928

Source Contig U35_24140

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14236_PI390587928	Hv_44K_v2	CTTCGGGTACAGTTCCTTAACTTCTAACTCTACCTCTAAATATTTAGCTCAGCATTTTTG	868	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24208.3	1459	7e-23	617 - 676	98	59 / 60	plus	ABC22088
MLOC	MLOC_24208.6	1215	7e-23	615 - 674	98	59 / 60	plus	ABC22088
MLOC	MLOC_24208.1	1182	7e-23	642 - 701	98	59 / 60	plus	ABC22088
Harvest21	ABC25043	940	3e-25	869 - 928	100	60 / 60	plus
Harvest35	U35_24140	940	3e-25	869 - 928	100	60 / 60	plus

Contig Sequence (940 bp)

>U35_24140 940 Hv_44K_v2
GGGGGGGCACGAGGGTCGCACGCCTCACACCCCGCACACTAGCCGCCGCCGCCCCGGAAA
GATGAAAGCCACTGGAAGCGGCGGCGAGTGGTGGTGGAACCTCCCGTCTCTTCGCCGCAA
CAACGAATCGCGGCGACGCGGTCGCCGCAACCAAGACGCTCGCGGCCGCCGCCGCGGCCC
CCCGCGGGAGCCGCTCTCGTCGTCGTCGTCGGACTCCGCCGGCCAAAGCCGTGGCTGGCC
CCTCGACTTCCCGTTCCAGCAGGCCGTGACCGCCGCCTGTCTCACCCTCACCGGCGACAC
GATTGCGCAGGTCCACCGCCGCATCGTCGACCGCCGAAGCCGCGGTCCCGAACCCGACAG
CAAGGCTATTATACCGGATCTATTGATGAACCATGATTGGCTCCGTGGGCTTCGTATAGC
ATCTTACGGATTTCTTCTCTACGGTCCTGGCTCATATGCATGGTATCAGTTTCTCGACAG
ATGTATGCCCCAGCCGACACTTGCGACTCTGTCTGCTAAGGTATGGTATGCACCCTCCCA
TGTAACCGGATTATTCGGGGATTTCGATCTTAACACATTCTATATTTTTATGTCTGTTGT
CGTTCCAGGTCCTACTGAACCAGATTGTTCTTGGTCCATGTGTTATCTCTGTAATTTTTG
CCTGGAATAACTTGTGGTTAGGAAAATTGTCGGAATTGCCATCTAAGTATCAGAATGACG
CCCTCCCCACTCTTCTCGATGGTACTGTTTCCGCCTGAGCGTATTCTTAACGTTGTGCTT
GAACAAAAACAATTCATGTTATGGTATGTCTCTCTTTATTCTGGTATATTGCAGGGTTCA
AATTTTGGATCCCAGTATCGATTGTAAACTTCGGGTACAGTTCCTTAACTTCTAACTCTA
CCTCTAAATATTTAGCTCAGCATTTTTGTAATCCTAGTCT

Homology of Contig U35_24140 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53060.2	226	1e-74	protein\|peroxisomal membrane protein, putative, expressed
Brachypodium v1_2	Bradi2g48920.3	239	2e-78
Arabidopsis v10	None