barSeed - Barley Seed Development Database

Probe CUST_14235_PI390587928

Source Contig U35_24141

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14235_PI390587928	Hv_44K_v2	AGCTCAGCTGTATTGAGGACTTTTTTGTCAGAGGAATAAGATTCCGTTGTATTGAAAAAA	604	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.083	1.382	1.270	0.953	0.447	0.420
Raw	875.718	1674.158	1408.917	1615.327	270.216	277.224

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_23571.3	3451	6e-21	3256 - 3312	98	56 / 57	plus
JLOC1	JLOC1_23571.2	3005	6e-21	2810 - 2866	98	56 / 57	plus
JLOC1	JLOC1_23571.1	3001	6e-21	2806 - 2862	98	56 / 57	plus
Harvest35	U35_24141	675	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (675 bp)

>U35_24141 675 Hv_44K_v2
AGGTTATTTTGTCACCAGTTGATTCTGTTGNTAGTACCTACCGTGCCCTCCTTCCGGAAG
GGACGCCTCTTGAGTTTCAGCGGATACTTGAGCTCAAGGGCTTGAAGAAAGCAGACCAGC
AAGCTATACTGGAAGACTTTAACAAGCACAGCCCCAGCATCAAACACCCTTACCATTACC
CCCACAGTCGCGCCACCAGTTGCCACAGCCACGGCATCAGTCCCGATGGCAGCAGTCCCG
CTCCCAACCCAAGCCGTCGCAACGACCCCAAGCATGTCCACCGCCTTGACGGGCGCCCTG
GCCAACCGGGAGGACGTGCTCGCCCGCGCGGCAGCGCTTGGACGCGGCGCGGCCACGACA
GGGTTCAAGAGGTTCCTAGCATTGACAGAGGCGGCCAAAGATCGGAAGGATGGACCGTTC
CGTAAGCTTTTCAACGCGTAGAGTTCTTGTCCCCGCTTGTCCATAGTTTGTTTACGCTGC
TCTTTGCAGTGCACATAGCTATAGAAAATTCTTCCCACACCGGTGTGTTCGTGTACCCTG
ACCTTCAGTGTATAATGGTTAGATGTTTTTTGACGCTCCCCAGTTTGCGGAGAAAAAAAA
TGGTAGCTCAGCTGTATTGAGGACTTTTTTGTCAGAGGAATAAGATTCCGTTGTATTGAA
AAAAAAAAAAAAAAA

Homology of Contig U35_24141 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None