barSeed - Barley Seed Development Database

Probe CUST_14234_PI390587928

Source Contig U35_24142

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14234_PI390587928	Hv_44K_v2	CTGTAAGTTGTAACTTTCAGAAAGAGATTGCTAGTTATCAGGGTTGTGTTTTGCCAAAAA	515	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.006	1.828	1.702	1.282	0.518	0.524
Raw	145.593	426.853	336.716	392.894	57.107	62.644

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364104	1744	9e-22	1690 - 1744	100	55 / 55	plus	ABC21789
MLOC	MLOC_52493.1	1554	9e-22	1262 - 1316	100	55 / 55	plus	ABC21789
JLOC1	JLOC1_33643.1	1408	5e-22	1242 - 1296	100	55 / 55	plus
Harvest21	ABC21789	586	3e-25	12 - 71	100	60 / 60	minus	ABC21789
Harvest35	U35_24142	586	3e-25	516 - 575	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_24142 586 Hv_44K_v2
GCCGTGCTGGAGGCGGTGGTGGCCGCCAACGCCAATGCCAGCGCCGGCCCACTGCGGTTC
GCGGCGCTCGACGTGACGAAGCTGGCCAACCTGCGGCCGGACGGCCACCCGGGGCCGTAC
ATGCGCAGCGACCCGTTCGCCGGCGGCCCCGACGCGCGGGTGCAGAACGACTGCGTGCAC
TGGTGCATGCCCGGCCCGATCGACACGTTCAACGAGATCCTGCTGCAGACCATCGCGGGG
TGACCGCGGCCATGATCGTGAGCTGAGTTGGTGACCTCTCTGAATTCTGATCGCGCGCTG
AGTTGTGTCTCTGATCTAGGAACCGTGAACTTTGGCCTGGTGTGCGTGCGTGCGTGCGTG
TGCATCGATGATTCTTTTGCTCGTCGACCGGACGATTAGGACACGAGATAGGTCGTGATG
AGAGCATCACTGGTTCCAGTCTGGAGAGAAGATTTGGAGTATGCAGGGAGTAGGAATTGC
TTCGAGGTCCTACGAGGCCTAATTTTCTGACGAATCTGTAAGTTGTAACTTTCAGAAAGA
GATTGCTAGTTATCAGGGTTGTGTTTTGCCAAAAAAAAAAAAAAAA

Homology of Contig U35_24142 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None