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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_14232_PI390587928Hv_44K_v2GTATTCGTGCGATTGTGACGCATTCCAGTGGTTCTTATCCTCTCTTTGTGATTTGTCAAA850GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.7731.6411.1360.8920.4170.384
Raw 685.5271018.110612.629755.454122.861124.748



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_16197.210932e-2417 - 7610060 / 60minus None
MLOCMLOC_16197.19212e-2425 - 8410060 / 60minus None
JLOC1JLOC1_11138.110728e-25889 - 94810060 / 60plus
Harvest21ABC207869133e-25851 - 91010060 / 60plus
Harvest35U35_241449133e-25851 - 91010060 / 60plus



Contig Sequence (913 bp)

>U35_24144 913 Hv_44K_v2
CTGCATCCTGCGACTCTAGTTCGTGCCGTGGGCTCTGCCGCCGCCGCTCTCCGAGGACCC
GCCGCTCGCCGTCTGCGCCGACGCGCTTCTCCGTCTAGAACCGCGCTACCTCCAAGCCCC
CCTACACGCCCCTCAAGGCCTCAACTGACGCCGCATCACCGCCCAGCCCCCTTCCCGACG
TCTCCCTTCATCTGTGAAGCGGCGGCGGCCACCACCCACGCCTCCACCGCCACCGCCACC
ACAAGGATTTACTACTGTATAAGTGCAAATTCTTGCTGGGGATGGCAAATGAAACTGAGA
AAGATAAACAAATTGCTGAGGAGGAGGAGGAAGAAGAAGAGTATGTCTTGCTAGAGTTGG
ATGATGTTCATTATTCCTGCATACAACCAAATGCCCCTTATATACTCTCTGGTTTGGATA
CATTGACTCCTACCTTGGTAGTAGGTGATAGCCTGAAGATGATTGGAGAATACGAAGAAA
CGGTTGGCACATGCTATTTATATTCAGAAAACGATGCTCCACCAAAACCCGTTCATGAAG
AGCCGACACCTCCCAGAGAAAACAAGGACAAGCAAGGCAGAAACATCAAGGAAGCACCAC
CCAAGGAGGTGAAACATCTCGCGAGCGTTCACAAGATCCTCAAATTCCGGTCAACCAGCA
AGGGCCATCAGGAGCCAAGAGCATACCGTTACAGGAACAACGAGTTTTGAAACACAATGC
TTGTAGCTGCTCCCCCCTTCTGTGATGCTTCTAATGCACATCATGCAATCCTTTGACCCT
TCAAATGGAATGCAAGGATGGCAGAAGTACTTGTTAATCTTAATTACCCACTAGCATCCT
CTATCTCGAGGTATTCGTGCGATTGTGACGCATTCCAGTGGTTCTTATCCTCTCTTTGTG
ATTTGTCAAATCT



Homology of Contig U35_24144 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None