barSeed - Barley Seed Development Database

Probe CUST_14230_PI390587928

Source Contig U35_24146

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14230_PI390587928	Hv_44K_v2	GTGTTTACTGCCTTATTCGTGTCACAAGCAAATGGGTGAACTGCCCTCGTTGTTGTTAAA	738	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52549.1	2186	2e-23	1348 - 1405	100	58 / 58	plus	ABC24660
MLOC	MLOC_52549.3	4840	2e-23	1302 - 1359	100	58 / 58	plus	ABC04072 ABC24660
MLOC	MLOC_52549.4	5401	2e-23	1282 - 1339	100	58 / 58	plus	ABC04072 ABC24660
JLOC1	JLOC1_33687.1	1561	1e-23	1234 - 1291	100	58 / 58	plus
Harvest35	U35_24146	812	3e-25	739 - 798	100	60 / 60	plus

Contig Sequence (812 bp)

>U35_24146 812 Hv_44K_v2
GGCGCGTCCTCGGGCGGGTACTTCGTCTCCGCGCTGGCGGCGAGGGTCAGGTTCAGCAGC
GTGGCCATCATGATTGCCGAGGGCGTGTTTGCCGCCATGGAGGAAATCCCGCCCGGCTAC
CCGCCGGCGCTGTTCGTGCACATGCCCAAGGACGCCGAGAGGGCGCAGATGGTGGCGGCA
AGCATAGACAGGCTCAAGTCAAAGCACGTTGATGTGCGGGAGATCCAGTGCAACGCATTT
GCCGTGAGTGCCGAATTCTTGGCAGCGAGGATCCCGGGGTTGACCCCGACCGTCGCCGAT
GGCCTTGTGGACATGCTTCGCCAGAAGTCGTTCTTGGATGAGAAGGGCTTTCTGAAGAAC
GATGGAAGGAGCACACCTTGGAAGGCCGCGGCGGAGGAAGCGAAGGTCTTGCCGGAGGGG
TTCCGGCTAGAGAGGCATGTGACGGAGGAGTTGAATATTGCATATGCATACCATGAATTT
ACCAGCCTGGAGAATGGAGAGATCTTCAAATGGTTCGATTCCCATATGGATCACAAGATT
TGAAGGCGCGCCATTTCTAGATGGCCAGCTTGATGTCGGATTCATGGAGTATTGCTGGTT
TTGAGAGGATGCACCATTATGATTCATCGGGTGGAAAGAAAGCAGTATATTCTCTAAGGT
TTATCCTCAAAGCTTGTAGTTTAACATACCCACTTATGGAATACGGTTTCTCATAGGGTC
ATGTTTTCCTTTGCCATTGTGTTTACTGCCTTATTCGTGTCACAAGCAAATGGGTGAACT
GCCCTCGTTGTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24146 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13650.1	353	1e-98	protein\|expressed protein
Brachypodium v1_2	Bradi3g08830.1	350	4e-103
Arabidopsis v10	AT3G58800.1	344	1e-53	unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). \| chr3:21748562-21749596 FORWARD LENGTH=344