barSeed - Barley Seed Development Database

Probe CUST_14228_PI390587928

Source Contig U35_50410

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14228_PI390587928	Hv_44K_v2	ACAATTTATGTCAGGAACTCAAGAGCCAAAGCATCTGGAGTGGTGGACTCCCATTTCAAT	574	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18083.1	915	7e-23	445 - 504	98	59 / 60	plus	None
MLOC	MLOC_18083.4	1011	7e-23	400 - 459	98	59 / 60	plus	ABC34687
MLOC	MLOC_18083.3	1159	7e-23	317 - 376	98	59 / 60	plus	ABC34687
MLOC	MLOC_18083.5	544	7e-23	246 - 305	98	59 / 60	plus	None
MLOC	MLOC_18083.2	961	7e-23	327 - 386	98	59 / 60	plus	ABC34687
JLOC1	JLOC1_12506.1	1243	4e-23	327 - 386	98	59 / 60	plus
Harvest21	ABC52530	641	3e-25	575 - 634	100	60 / 60	plus
Harvest35	U35_50410	641	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_50410 641 Hv_44K_v2
TGCGAAAGTGAAAAGGTTGAATCATATGCATATTGCAAATCGCTTTCGATATTCACTTCG
TGTTTATGCATCTATACTATACCTTCGTCTACCAGAACACTTTGAAGTCATCTTGTGTGG
ACGAACTGTTGAACCTCATCATATTGTAAAGGACCTCATATACCGTGAATGTATCAAATA
TCGACCACAAGTTGGAGTAAGCGTACAGGTTGATGTCGTTACTTCAATTGGCTTCTTAAA
AGGTGCTCCACACCTGGATATCTATGGATTTAATATCTACCATAGGAATCGTCTTATTCT
GCCTTTTTGGGCTGCAGGCTCTGAGAGAGGTCGAGGCAGAGGCATTGCTGGGGTTTTGGA
GGCGAACTTTATACGACCTACACATGATAAGCAAGATTTTGAGAAGACGGAACTTTTTCA
GAGACTTGAGACGAGATTAAAAGACATGACAATGGAGTACTGGAAGCACCATGCTCATCT
GATTGGCTACCGGCAAATCACANAATCTCCTCCAGCATATTATGCATCTATTGCTGCTAC
CCATGACAATACCCCAGTAGCCCAAGCTGCGGCAACAATTTATGTCAGGAACTCAAGAGC
CAAAGCATCTGGAGTGGTGGACTCCCATTTCAATGGAGGTA

Homology of Contig U35_50410 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g28060.3	541	3e-91	protein\|ATP-binding region, ATPase-like domain containing protein, expressed
Brachypodium v1_2	Bradi2g40747.1	658	6e-64
Arabidopsis v10	AT1G19100.1	663	2e-55	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein \| chr1:6595560-6601159 FORWARD LENGTH=663