barSeed - Barley Seed Development Database

Probe CUST_1421_PI390587928

Source Contig U35_42006

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1421_PI390587928	Hv_44K_v2	GACCCTGTAAAATGTTAGGAAGTATTAGTATTAGTCTAGGAGTCCTCATTAGTCTATTAG	126	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39878.1	318	7e-23	247 - 306	98	59 / 60	plus	ABC37351
Harvest21	ABC37351	539	3e-25	127 - 186	100	60 / 60	minus	ABC37351
Harvest35	U35_42006	539	3e-25	127 - 186	100	60 / 60	minus

Contig Sequence (539 bp)

>U35_42006 539 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGAATATGCAACTTATGTTTATTGAAGGCCCAAGGGGCATATA
TATATTACACAAGACTTGAGGGGCAAGGAAAGTAAACATAGACTAATAAGGACTCCTAGA
CTAATACTAATAGACTAATGAGGACTCCTAGACTAATACTAATACTTCCTAACATTTTAC
AGGGTCAAAAAACGTCTTATATTTTGATACGGAGGGGGTAATACTGAACAACATGGTACG
ATGACACATGACCCAAAATAAAATTTCTCTGAAGTGACCAAAATACACTATTCTTAGAGT
AGCAACAATACTAGGAGGGGTAGGAGCCGACCAAAGTTGACATGGGGGGAGGTGATAAAA
AGAGGCTTGAAGGATTGGGATGTACCCAGGGATTTGTCTCTTGATAGGACTACATGGAAT
GATGGAAGTCAGTAGTTCATGTACCAGAACCTTGATTTATTTTGGTTACTTTTACTTTCT
CTATTCTCTTTTGGGGTCTTACTGGTTTCTGGTGGGTTTCATCTCTAGCCTACCCCAAA

Homology of Contig U35_42006 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None