- Probe CUST_14219_PI390587928
- Source Contig U35_50419
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14219_PI390587928 | Hv_44K_v2 | CGACATTCAGAATTTGGAAGATTTCTTGTTAGAGCTGATGGACTATCCTTGTTTTGGCTA | 333 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.323 | 1.758 | 1.249 | 0.805 | 0.353 | 0.417 |
| Raw | 2894.970 | 6001.640 | 3727.433 | 3748.390 | 574.972 | 749.047 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63473.2 | 4015 | 2e-24 | 3913 - 3972 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_63473.4 | 2669 | 2e-24 | 2592 - 2651 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_63473.1 | 4046 | 2e-24 | 3969 - 4028 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_41576.1 | 3946 | 8e-25 | 3834 - 3893 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52541 | 398 | 3e-25 | 334 - 393 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50419 | 398 | 3e-25 | 334 - 393 | 100 | 60 / 60 | plus |
Contig Sequence (398 bp)
>U35_50419 398 Hv_44K_v2 TTTTCCGATGAACTACTCCCTGTACTGGAGAGGCTAGAGCATTTAAAAGAGGACAAAGTT GGACGTAATCTCAAGTTGTTCTACAGATCTGTTAGCACTCTGAAAGAGATGACGGTAAGA AGCATGACCATGTGATGGATACTGGGAAGCAAGTATACAACTGAAATGATTTGTAGGATG TGTAACAGTGTTGTTGTATATGGTGACTTATTGGACACATCGTAATGTCATTGCTCTGGT GAGATGCCAATTTCTGCTCTGATGTGTTTTTGATTGAGGAATTCAGTAGTTTAGTCAAAT TGTAAATTGATCTCCATCCTTAAGATCTAGGCTCGACATTCAGAATTTGGAAGATTTCTT GTTAGAGCTGATGGACTATCCTTGTTTTGGCTATTTAT
Homology of Contig U35_50419 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |