- Probe CUST_1419_PI390587928
- Source Contig U35_42007
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1419_PI390587928 | Hv_44K_v2 | ATCAGCGAATTCTACGCCGTGATATTCCCCTCCCTCATGCAACTGGAGCACGGGATCAGC | 313 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355861 | 1224 | 2e-24 | 500 - 559 | 100 | 60 / 60 | plus | ABC10403 ABC10404 ABC21749 ABC36778 |
| MLOC | MLOC_64268.1 | 1501 | 2e-24 | 660 - 719 | 100 | 60 / 60 | plus | ABC10403 ABC10404 ABC21749 ABC36778 |
| MLOC | MLOC_64268.2 | 1244 | 2e-24 | 616 - 675 | 100 | 60 / 60 | plus | ABC10403 ABC10404 ABC21749 ABC36778 |
| MLOC | MLOC_3847.3 | 1009 | 7e-23 | 284 - 343 | 98 | 59 / 60 | plus | ABC06657 ABC10403 ABC10404 ABC21749 |
| MLOC | MLOC_3847.2 | 755 | 7e-23 | 284 - 343 | 98 | 59 / 60 | plus | ABC06657 ABC10403 ABC10404 ABC21749 |
| MLOC | MLOC_3847.1 | 1104 | 7e-23 | 379 - 438 | 98 | 59 / 60 | plus | ABC10403 ABC10404 ABC21749 |
| JLOC1 | JLOC1_42184.1 | 1407 | 8e-25 | 610 - 669 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2314.1 | 900 | 4e-23 | 322 - 381 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC10404 | 1054 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus | ABC10404 |
| Harvest21 | ABC10403 | 927 | 3e-25 | 766 - 825 | 100 | 60 / 60 | minus | ABC10403 |
| Harvest21 | ABC47347 | 505 | 1e-23 | 234 - 293 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_42007 | 563 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_4343 | 805 | 3e-25 | 65 - 124 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46792 | 505 | 1e-23 | 234 - 293 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_4344 | 1163 | 1e-23 | 339 - 398 | 98 | 59 / 60 | plus |
Contig Sequence (563 bp)
>U35_42007 563 Hv_44K_v2 GCTCTGGTGGCGGAGGAGGAGGGGCAGGGAGATGGTGGCGGCGGCCACCCGGAGGTCGTT CAGGGACTCGCTCAAGGTGCTGGAGGCCGACATCCAGCACGCCAACACCCTGGCGTCCGA GTGCTCGCGGGACTACGACGGGGCGTGCCTGCAGATGCGCATGTCCTACAGCCCCGCCTC GCGCCTCTTCCTCTTCCTCCTCCAGTGGACCGACTGCAGCCTCGCCGGCGCCCTCGGCCT CCTCAGGATCCTCATCTACAAGGTCTATGTGGACGGCACCACCACCATGTCCACCCACGA AAGGAAGGCCAGCATCAGCGAATTCTACGCCGTGATATTCCCCTCCCTCATGCAACTGGA GCACGGGATCAGCGACTCCGACGACCGGAGGCAGAGGGCGGTGTGCTCCGAGAGGTACAG GAGGAGAGACGAGCCGGAGGACAGCAAGAGGCCCGTCTCCGAGATCGACGCCGAGATAGA AGAGGAGTGCGGGATCTGCATGGAGCTCAACAGCAGGGTCGTGCTGCCCAACTGCAGCCA CGACATGTGCATCAACTGCTACC
Homology of Contig U35_42007 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g35670.1 | 243 | 4e-86 | protein|zinc finger, RING-type, putative, expressed |
| Brachypodium v1_2 | Bradi5g26340.2 | 250 | 7e-94 | |
| Arabidopsis v10 | AT5G01520.1 | 242 | 1e-71 | RING/U-box superfamily protein | chr5:206797-208399 FORWARD LENGTH=242 |