barSeed - Barley Seed Development Database

Probe CUST_14188_PI390587928

Source Contig U35_27693

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14188_PI390587928	Hv_44K_v2	GGCGTTGGGATCGACCGTACAACTGATTACTTTGTCATGGAGAAAGTGGATGTACTCATA	485	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.680	0.536	1.294	1.574	1.048	1.321
Raw	18.053	19.805	45.880	90.054	21.438	28.920

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251786.1	1861	2e-24	651 - 710	100	60 / 60	plus	ABC24531
MLOC	MLOC_5100.1	2016	2e-24	443 - 502	100	60 / 60	plus	ABC24531
MLOC	MLOC_5100.3	1761	2e-24	403 - 462	100	60 / 60	plus	ABC24531
MLOC	MLOC_5100.2	1636	2e-24	435 - 494	100	60 / 60	plus	ABC24531
JLOC1	JLOC1_3252.1	1796	8e-25	583 - 642	100	60 / 60	plus
Harvest21	ABC45937	482	3e-25	369 - 428	100	60 / 60	plus
Harvest21	ABC22389	546	3e-25	486 - 545	100	60 / 60	plus
Harvest35	U35_46201	482	3e-25	369 - 428	100	60 / 60	plus
Harvest35	U35_27693	548	3e-25	486 - 545	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_27693 548 Hv_44K_v2
CGAGCTTTCTTTTTAACCGCCGCTTCTGCTCGTCGCCGGATTACGATTAGCCCGAACCCT
CGTCGTGTACGCGTGTGCTGCTGCTGCTGCTGCTGCCGCTGCCTGCGTGATGGCGTCGGC
AGCGGAGGAGAAGCATAAGAAGCAGGAGGCGGAGGCGGGGTTGGCGATTGGGGGCAGAGG
TGTGGACGTGAGGAAGGACGGGGTGGCGAGGGAGGTGGTGCGGATGGAGAGGGAGGCGGT
GATCCCCATCATCAAGCCCAAACTAGTAATGAAGCTCGCCGACCTCATCGATAATGGAAA
AGAGCAACTTCAAGTTGTTATCTGATGAAGAGTATGATGTTGCGCAGTCTGGAAAATATC
TTTTGAACCTTCCCATCAAAGTTGATGAATCTAAGCTGGACAAGAAGTTGTTGACAACAT
ACTTTAAAGAACACCCACATGATAATCTGCCTACATTTGCTGATAAGTATATTATATTCC
GCCGTGGCGTTGGGATCGACCGTACAACTGATTACTTTGTCATGGAGAAAGTGGATGTAC
TCATATCC

Homology of Contig U35_27693 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None