barSeed - Barley Seed Development Database

Probe CUST_14183_PI390587928

Source Contig U35_27698

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14183_PI390587928	Hv_44K_v2	TTCTGACGATTTTGTTTACGTGGGTGATGGAACTGCCGGAGGCATTTCCTATGATCTGAT	550	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.727	0.857	1.832	1.498	1.060	0.598
Raw	9.951	15.892	33.341	41.581	10.805	6.257

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33861.1	3045	2e-24	637 - 696	100	60 / 60	plus	ABC14275 ABC14276
JLOC1	JLOC1_21879.2	2926	8e-25	549 - 608	100	60 / 60	plus
JLOC1	JLOC1_21879.1	2883	8e-25	608 - 667	100	60 / 60	plus
Harvest21	ABC23734	642	3e-25	551 - 610	100	60 / 60	plus
Harvest35	U35_27698	642	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_27698 642 Hv_44K_v2
GATCCACTCTCCCCTCCCTCATTCCATCGAAAAAAAAAATCCAGCGATCGATCTTCAGCT
CCCGCGAACCTCCCCTCTCCGTAAGGTGGGTGGGGTCCATCGGAGGAAGTGGGGAGAAGA
TGGACGCAGAGCAGGAGTCGCGGTGGGCGGCGGCGCAGGGGATTGGCATCGGCGAGGACC
TCGTTCCAGCTGCGCTGCGGCACCTGGAGTTCCTCGCCAAGGTCGACCGTCGCCGGTGGC
TCTACGAGGGACCGCTGCTCCACAGGGCCATACACAGGTACAAAGCTTGCTGGCTTCCTC
TTCTTGCCAAGCACACTGAGGCTTCTGTTGCAGATGAGCCTTTAGTTGTCCCGCTTGATT
GTGAATGGATATGGCACTGCCATCGGCTTAATCCGACTCAATACATAAAGGACTGCAAGA
GATTATATGGCAGAATACTGGGCACTAACAATGTCAAGTCCTCCATTCAAGCAAATTCCA
AGGATCAGGCTGAGAAAGTTTGGACTGAGTTATATCCTGGAGAGCCTTTTGAGTTGGAAT
ACTCAAGTCCTTCTGACGATTTTGTTTACGTGGGTGATGGAACTGCCGGAGGCATTTCCT
ATGATCTGATCTCAGCTGTTAGGAGACAGTCTTCTTTCGTCT

Homology of Contig U35_27698 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g40590.2	931	2e-87	protein\|DUF1399 containing protein, putative, expressed
Brachypodium v1_2	Bradi4g13280.1	1177	9e-95
Arabidopsis v10	AT2G22660.2	819	4e-53	Protein of unknown function (duplicated DUF1399) \| chr2:9627737-9630840 FORWARD LENGTH=819