barSeed - Barley Seed Development Database

Probe CUST_1415_PI390587928

Source Contig U35_30032

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1415_PI390587928	Hv_44K_v2	AATCATCATAAGCGCTCGAGCTCGAAGAAAAAAGGGGGCAAGAAAACCCATATTACCCTC	126	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.089	1.282	1.483	0.978	0.797	0.627
Raw	61.618	98.502	115.259	105.332	33.346	28.930

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC29683	356	3e-25	127 - 186	100	60 / 60	plus	ABC29683
Harvest35	U35_30032	356	3e-25	127 - 186	100	60 / 60	plus

Contig Sequence (356 bp)

>U35_30032 356 Hv_44K_v2
ATTGTCATACGCAATGTAAATGTAACATCAAAGAAGAAGCATAGGTCATCAGAGAGCGAG
TCACACTCAGGCTCGGATATGTCATCAGAGGATAGTGATGATTCACACAGAAAATCAAGC
AAGAGGAATCATCATAAGCGCTCGAGCTCGAAGAAAAAAGGGGGCAAGAAAACCCATATT
ACCCTCCTCCCTATCCCCCAACAGATGATCATAGGTACAACCACTCGGAAAGGAGACCAT
CAAGGAAGCACTCAGCAGATAGCAAGGACTTCGACAACTCCGATGATGAAAGTGACGACC
AAAGCGGTTCAGAGAGGGAGAGTTCTCATGGCCGCAAGTCCAGTAAAAAAAAAAAA

Homology of Contig U35_30032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None