- Probe CUST_14150_PI390587928
- Source Contig U35_50009
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14150_PI390587928 | Hv_44K_v2 | GCTTTCTCCAACTTATTACACATTTGTGACCCAGATTTATGGACATTGTTCTGAACTTAT | 341 | GeneList: mediumpurple3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.275 | 2.801 | 1.289 | 0.712 | 0.203 | 0.209 |
| Raw | 6267.230 | 8377.737 | 3273.153 | 2862.213 | 288.407 | 323.047 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73567.2 | 733 | 2e-24 | 574 - 633 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_73567.1 | 2100 | 2e-24 | 1941 - 2000 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_48985.1 | 445 | 8e-25 | 311 - 370 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52000 | 437 | 3e-25 | 342 - 401 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50009 | 437 | 3e-25 | 342 - 401 | 100 | 60 / 60 | plus |
Contig Sequence (437 bp)
>U35_50009 437 Hv_44K_v2 GAACTACATGATTTTTTCATGAGGCACTATGGAGATATTGAAGAAATAAGTGTTGAGGAG CCAATCGAAAGGAGGCCACCTCTTTACGCACACGTTACATTTTACTCGCAGATGACACTC TTCCATGTCCTAGATGGGAATCGGAGAGTCAAGTTCATGATCAGGGGAAAACATCTATGG GCTCGACAGTATGTGCCAAAGAAGAAGAAGAAAACTGATGTCTTTATGACCAAAGCCTGA TTTCATAAACATTCAAGAAAACGATATGCCAAGCATTCTGGAAGCATACTCGAATAGAAT CTGCACTTGTAAGATTATTCTTGTGCATATCTAATTCTCGTGCTTTCTCCAACTTATTAC ACATTTGTGACCCAGATTTATGGACATTGTTCTGAACTTATAATGAATTACATTCTGAGG ACTCAAATTTGTTTGTT
Homology of Contig U35_50009 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |