barSeed - Barley Seed Development Database

Probe CUST_14145_PI390587928

Source Contig U35_50017

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14145_PI390587928	Hv_44K_v2	CTCTTCTCGAGAAGAAGCAATACAAAGGCACGATGGATGAGATGAAGCGTCGAAAGATAG	386	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.017	0.911	1.180	1.036	0.257	0.238
Raw	45.309	66.979	72.603	103.091	8.663	8.780

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365734	2464	2e-24	1651 - 1710	100	60 / 60	plus	None
MLOC	MLOC_72026.3	2167	2e-24	767 - 826	100	60 / 60	minus	None
MLOC	MLOC_72026.1	2197	2e-24	787 - 846	100	60 / 60	minus	None
MLOC	MLOC_72026.2	2588	2e-24	785 - 844	100	60 / 60	minus	None
JLOC1	JLOC1_47909.1	2256	8e-25	1413 - 1472	100	60 / 60	plus
Harvest21	ABC52011	621	3e-25	387 - 446	100	60 / 60	plus
Harvest35	U35_50017	621	3e-25	387 - 446	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_50017 621 Hv_44K_v2
TCCACAGCCTAGAATACTGATGGCCATGGCAAGAGATGGACTGTTACCATCTTTCTTCTC
CGACGTGAACAAGCAGACACAAGTACCTGTCAAGGGCACAGTTGTGGCTGGTATCTGTGC
TGCTACTCTAGCGTTTTTCATGGATGTTTCTCAGTTGGCAGGAATGGTCAGTGTGGGCAC
ACTCCTCGCGTTCACCATAGTGGCAGTATCGATCTTGATACTCAGATATGTTCCTCCAGA
GGAGGTCCCTCTATCATCATCTCAGCGAGAGTCAATGGGTTTGAACCAAGAATATGATGA
AGAAAAGGGCAGGGATCCACTTGGAGATGAGATCTGCGACACATCTCAAATAAAGGATTT
GATTGTGACAGAACCAATGAAGGACCCTCTTCTCGAGAAGAAGCAATACAAAGGCACGAT
GGATGAGATGAAGCGTCGAAAGATAGCCGCTTTCAGCATAGGGTCTGTTTGTCTAGGAGT
TCTGGTCCTCACGGCTTCAGCTTCTGCCACATGGCTACCTTTCCTACCGCTTTGCATTGG
TTGCATTGTTGGCGGTGTGCTACTCATACCTGGTCTTGTTGTACTCTGCTGGATTGACCA
AGATGATGGCAGGCACTCTTT

Homology of Contig U35_50017 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g45170.1	640	2e-90	protein\|amino acid permease, putative, expressed
Brachypodium v1_2	Bradi1g13440.1	640	2e-104
Arabidopsis v10	None