- Probe CUST_14137_PI390587928
- Source Contig U35_50027
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14137_PI390587928 | Hv_44K_v2 | ATCAATCCTTTTAGTAGTCTTTCCTCAGTCTTCTTTGAGCAACATACAAGGGAATCATGG | 583 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.863 | 1.334 | 1.421 | 1.116 | 0.623 | 0.570 |
| Raw | 52.611 | 134.018 | 128.115 | 154.948 | 31.019 | 30.421 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63252.1 | 2778 | 2e-24 | 2276 - 2335 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_63252.2 | 2795 | 2e-24 | 361 - 420 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_63252.3 | 2779 | 2e-24 | 350 - 409 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_63252.4 | 2746 | 2e-24 | 350 - 409 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_41421.6 | 3570 | 8e-25 | 2369 - 2428 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41421.5 | 3380 | 8e-25 | 2179 - 2238 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41421.4 | 3547 | 8e-25 | 2346 - 2405 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41421.3 | 3436 | 8e-25 | 2235 - 2294 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41421.2 | 3491 | 8e-25 | 2290 - 2349 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41421.1 | 3507 | 8e-25 | 2306 - 2365 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52023 | 646 | 3e-25 | 584 - 643 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50027 | 646 | 3e-25 | 584 - 643 | 100 | 60 / 60 | plus |
Contig Sequence (646 bp)
>U35_50027 646 Hv_44K_v2 CTTGGAAGGATTGGAACAAACCTTGTTGCCGCTACGTCTAAAGCATGCTGCTGGGAATTC AAGTGAATGCTTTGATTCGTACTGGAAGTACAAGTCAACACCTAATACCTTCTACACAGA TGCAGAAAGATGTCTAAGAGTGGCTCTTCATTCTTCGCCACCAGTAATGGCAGCCTTGTT ACCATTAATACAGATCCTCCTGCTTGGTGATAAACTGAAAGATGCACTTTGTGAACTTGA GAGGACCTGCCGCGGTTCTACTACAGCGCTTCCTTTCAGATTGCGTGGTAGATTGCTAGA GTATTTTGACCAAAACCAAGTATCAACTATATCTTCTTGCTATGAGGAAGCTTTGCAAAG AGATCCTACATGTAGCTACTCGGTTGAGAGGCTAACTGAAATGCACAGAAAAGGATATTA TAATACCACACGACTACTTGAGAGAATTGCTTTGCATCTAGACTCTGTGAACGGCAAGCC TTTCGTCTGGGAGGAGCTTGTATCATGCTTCCTTCGGCTTTTTTCTGATCGTACTACTGA CTACGAGGATTGTATTTCATGTAATGTTGAAGGAGAGGCATCGATCAATCCTTTTAGTAG TCTTTCCTCAGTCTTCTTTGAGCAACATACAAGGGAATCATGGAAG
Homology of Contig U35_50027 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g13570.1 | 676 | 7e-103 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g44577.1 | 758 | 3e-104 | |
| Arabidopsis v10 | None |