barSeed - Barley Seed Development Database

Probe CUST_14136_PI390587928

Source Contig U35_50028

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14136_PI390587928	Hv_44K_v2	ATGTTTTCCAGACACCTGCTACCCAGTCAACTAATCAAGAATTAGAAGCTTTTGCCGTAC	376	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371843	2486	2e-24	818 - 877	100	60 / 60	plus	ABC38783
MLOC	MLOC_63892.2	1541	2e-24	948 - 1007	100	60 / 60	plus	None
MLOC	MLOC_63892.3	1423	2e-24	879 - 938	100	60 / 60	plus	None
MLOC	MLOC_63892.1	1685	2e-24	1088 - 1147	100	60 / 60	plus	None
JLOC1	JLOC1_41900.2	1377	8e-25	769 - 828	100	60 / 60	plus
JLOC1	JLOC1_41900.1	1359	8e-25	769 - 828	100	60 / 60	plus
Harvest21	ABC52024	439	3e-25	377 - 436	100	60 / 60	plus
Harvest35	U35_50028	439	3e-25	377 - 436	100	60 / 60	plus

Contig Sequence (439 bp)

>U35_50028 439 Hv_44K_v2
AATGTGAGCAAATGTTCAACAGTAAGGATAGAAAGGCCACCAAATAAAACATCAGAAACT
AACAAAAACAGCTGTGGTTCTGGAAGCAAGTTGGTTATAGCAGAAAATTCTAAGTCCAAT
AAAGACAGTGAAAAAGAAACATCGTCCCGCAGTTTACAATTCAATGGTCCTGTTGATGGC
AAGGAAAATTCACAAGGTACCATGATCTCCTCCAATGAGGCAAATCCTGTCTTCAGTGCA
AGCCCTCTTCATATTCCAACTACTTCTGCTGATTCATGTGGTGTTTTGGCCGAGGATGTG
ATGCCAGATCCATCAGAATGTTCTGTTGATTCACCGTGCTATAGAGGTGCTTCAGCTTCT
CGACTGTCTCCATTTGATGTTTTCCAGACACCTGCTACCCAGTCAACTAATCAAGAATTA
GAAGCTTTTGCCGTACGAC

Homology of Contig U35_50028 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g16490.1	712	1e-58
Arabidopsis v10	None