barSeed - Barley Seed Development Database

Probe CUST_14135_PI390587928

Source Contig U35_50029

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14135_PI390587928	Hv_44K_v2	GCGGCATCTGTATGAGCAATGGTTGGTTCTGAGAAAGCTATAGAGCTAGATAGATCACTC	576	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.509	1.781	1.514	0.889	0.294	0.290
Raw	3394.417	6361.573	4601.300	4245.040	499.733	535.909

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53435.4	2218	2e-24	2046 - 2105	100	60 / 60	plus	None
JLOC1	JLOC1_34332.1	2953	8e-25	2639 - 2698	100	60 / 60	plus
Harvest21	ABC22539	639	3e-25	577 - 636	100	60 / 60	plus
Harvest35	U35_50029	639	3e-25	577 - 636	100	60 / 60	plus
Harvest35	U35_812	812	3e-25	598 - 657	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_50029 639 Hv_44K_v2
GTGGTCCTAGTCAAGTTGTCTACCGGGTGGAAGCACTCAAAAGGCAACCTTTCGTGGATA
AGGTCACTATAATTCTTCCAGCCACTGGCCAGACTGAAGAATTAGAAGTTAACTATGTTA
CAGGAGACAAAACAGAGCCATCGTCATCAGGCTTAATCACACTTGGTCTTTTCATCGCAT
GCATCATCGTGCCAGCAGTTATATTCTGGCCCATCATGAAACTACTGGAGAAACTGACCC
GGCGGGCACCACCACGGCATGCAGCGCCTGCACCAGCAGCGGGCCCTGCCATGGCGCCTG
ACCCTGCCTCCCCGGCTATTGGCGAGTTCTCTCCTCGCACTCCCCAGCCTTTCATGGAGT
ACGTGAGGAAGACCGTCGACGACACGCCTTACTACAAGCGTGATGCGAGGAGGCGATTCA
ACCCTCAAAATACGTACTGAGCGTGTGTAAACCGGGCAGTAGAGTCGCTGCTGCTGTGTT
TCCCCCCTAGTTTATGATTTAGAAGGGTAGCCTTGTAATCCCTGTACTGTAAAATTCGTG
TATCATCAATACTACGCTGCCAATTTTCAAGTCGTGGCGGCATCTGTATGAGCAATGGTT
GGTTCTGAGAAAGCTATAGAGCTAGATAGATCACTCAAC

Homology of Contig U35_50029 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None