barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_14131_PI390587928Hv_44K_v2TCTATCAGGGGCGAGTTCCGCGAGGAGTTCAAGCAGAAGAACCCCAAGAACAAGTCCGTC357GeneList: darkturquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.5230.5851.2391.6560.8421.103
Raw 1865.0533177.3736028.60712679.4702317.2933255.070



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_78554.115762e-24275 - 33410060 / 60plus ABC02173
JLOC1JLOC1_52356.113766e-21402 - 4609758 / 60plus
Harvest21ABC520384863e-25358 - 41710060 / 60plus
Harvest21ABC298895522e-2184 - 1429758 / 60plus
Harvest21ABC0217610752e-21303 - 3619758 / 60plus
Harvest21ABC021759062e-21198 - 2539855 / 56plus
Harvest21ABC021745172e-21325 - 3839758 / 60plus
Harvest21ABC021739562e-21235 - 2939758 / 60plusABC02173
Harvest21ABC021716402e-21313 - 3719758 / 60plus
Harvest35U35_500354863e-25358 - 41710060 / 60plus
Harvest35U35_5867112e-21314 - 3729758 / 60plus
Harvest35U35_58410242e-21239 - 2979758 / 60plus
Harvest35U35_5838312e-2184 - 1429758 / 60plus



Contig Sequence (486 bp)

>U35_50035 486 Hv_44K_v2
CTCCGTCTCCGTCTCCTTCCTTCCTTCCTTTCCCCAAACCAGACCAGGAGCGCCCTCCCC
ACCCCAACCCAGGAAACCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGGCCGA
CACCAAGTTGGCGGTGAAGAGCAAGGGGGCGGAGAAGCCGGCCGCCAAGGGGAAGAAGGG
AAAGGCAGGCAAGGACCCCAACAAGCCCAAGAGGGCGCCCAGCGCCTTCTTCGTCTTCAT
GTACGTCCTCGGATCCACCATCCTTCCTGTTACCAGATTCTCTTTTTTTTCTGCCCGTGA
TTTCCGGGCGGCCGTTGTTCTCAACCTGACCCTGCTTCCGCTTGTTGGTTGGTACCATCT
ATCAGGGGCGAGTTCCGCGAGGAGTTCAAGCAGAAGAACCCCAAGAACAAGTCCGTCGCC
GCCGTCGGCAAAGCGGCCGGTGAGAGGTGGAAGAGCTTGAGCGAATCCGAAAAGGCCCCC
TTTGTT



Homology of Contig U35_50035 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None