barSeed - Barley Seed Development Database

Probe CUST_14130_PI390587928

Source Contig U35_50036

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14130_PI390587928	Hv_44K_v2	AACCGAGCTCGTCACAAGGAATTAGAAGATTTCCACAATCAAGTTATACTGGGATTTTTT	427	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.026	1.117	1.177	1.261	0.740	0.648
Raw	113.900	203.003	179.976	305.418	62.656	59.527

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63770.2	1480	2e-24	1311 - 1370	100	60 / 60	plus	None
MLOC	MLOC_63770.3	1569	2e-24	1309 - 1368	100	60 / 60	plus	None
MLOC	MLOC_63770.1	1622	2e-24	1319 - 1378	100	60 / 60	plus	None
MLOC	MLOC_63770.4	1520	2e-24	1291 - 1350	100	60 / 60	plus	None
JLOC1	JLOC1_41809.2	1591	8e-25	1291 - 1350	100	60 / 60	plus
JLOC1	JLOC1_41809.1	1620	8e-25	1320 - 1379	100	60 / 60	plus
Harvest21	ABC52039	593	3e-25	428 - 487	100	60 / 60	plus
Harvest35	U35_50036	593	3e-25	428 - 487	100	60 / 60	plus
Harvest35	U35_33128	293	3e-25	52 - 111	100	60 / 60	minus

Contig Sequence (593 bp)

>U35_50036 593 Hv_44K_v2
TCTGTTTTTATCCTGTTCAGGTAGGAAAAGGTGGGATTGTTCGTGACCCTCTGGTTCATA
AGGAGGTGTTAGATAGGATAATTTCAGGCATTGAGCAGTTTGGATTCCGCAATGAGGGCT
GGATTGAGTCTCCGCTGAAGGGCGCAGAAGGGAACATAGAGTTTCTTGCCTGCTTCCAGA
GGATCCCAATTCCAGAGCCACAAGCAGAGGGAGAGGCAGATGCAGAGCCAGAGGGAGAGG
GAGTGGCAGAAGCAGTGGCGGAGACGGTGGCGGAGCCGGAGCCGGAGCCAAAGGAAACAT
GATTATTATTATGTCCATGGCATGGCAAGTTTTTTTTTAGAGAATAGCTGGAGAATTCTG
ATTGATCTGTAACCAAGGAAGTTATAGGAGATTAGCATGCTGTGATATGAGATATCTCCT
TTGCTGTAACCGAGCTCGTCACAAGGAATTAGAAGATTTCCACAATCAAGTTATACTGGG
ATTTTTTTGCATATGATCAGAATTGCATTGTGCAAGACCGACAAAGCAGATCCAGACATG
ACAGTCAGGTACTCAATTGTGTACAAAATTGAAATGGAATGATTTTTTTTAGC

Homology of Contig U35_50036 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None