barSeed - Barley Seed Development Database

Probe CUST_14121_PI390587928

Source Contig U35_50049

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14121_PI390587928	Hv_44K_v2	AGAAAGGAGACAAAGGTGATTTCAGCTTACAGGAGAGCAGAGTTCCTTGGGCTCATCATT	296	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11338.3	1891	7e-23	401 - 460	98	59 / 60	plus	ABC12978
MLOC	MLOC_11338.2	2535	7e-23	404 - 463	98	59 / 60	plus	ABC12978 ABC12979 ABC39229
JLOC1	JLOC1_7502.1	2488	4e-23	410 - 469	98	59 / 60	plus
Harvest21	ABC52055	455	3e-25	297 - 356	100	60 / 60	plus
Harvest35	U35_50049	455	3e-25	297 - 356	100	60 / 60	plus

Contig Sequence (455 bp)

>U35_50049 455 Hv_44K_v2
TTTGGGCGATCCCATAATGCTTTCGGGCATCCCATGCCCCACTCAGCCACCTTTTTCATC
CAACACACCATTTAGCTCTACAACAGGCCAACATTATTCATATGTTCCTACCTTTGGGGT
GCGATCTGCGCCTTCATTTGGGCCCTTTGGTCGAGTGTCTCAAAAAGGCAGCAGGGTTTC
TGCTTATACCAGGACTCCTGGTGATGATCCTGAACGTAGTAATTACCTCGCATCTATTTC
AGCAATGCCGATATTCAAGGGAAAATCTCACGAGGAGCTTCGATATGAAGATTATAAGAA
AGGAGACAAAGGTGATTTCAGCTTACAGGAGAGCAGAGTTCCTTGGGCTCATCATTCCTG
GCAGCCCCAGCCCCCAGTGAATGCCTTCATAAATCCTGTCAAGCCATCCTCGGTTTCATA
CCCCTCCCGAGCCATCCTCAGCACCTGTGGGACTG

Homology of Contig U35_50049 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None