barSeed - Barley Seed Development Database

Probe CUST_14116_PI390587928

Source Contig U35_50062

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14116_PI390587928	Hv_44K_v2	ACGGGCATCATGCTAGTTATTTCCAAAAAGCTGGCTGACATTTAAAAGTGTTCACATTGT	336	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368916	2351	2e-24	1705 - 1764	100	60 / 60	plus	ABC15285 ABC45736
MLOC	MLOC_648.1	291	2e-24	34 - 93	100	60 / 60	minus	None
MLOC	MLOC_46513.1	1444	7e-23	242 - 301	98	59 / 60	minus	ABC45736
MLOC	MLOC_41363.1	311	7e-23	175 - 234	98	59 / 60	plus	None
JLOC1	JLOC1_30118.1	1425	4e-23	243 - 302	98	59 / 60	minus
JLOC1	JLOC1_26957.1	260	4e-23	160 - 219	98	59 / 60	plus
Harvest21	ABC52072	622	3e-25	337 - 396	100	60 / 60	plus
Harvest35	U35_50062	622	3e-25	337 - 396	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_50062 622 Hv_44K_v2
GTACTTTGACCATGAGGACATTATCTATCATATTACTCATAATACTGAACATGCACTAAA
ATGCTATAGTGAGGAGTAAGCTAAGGACATTGAGAAACTATATCACTTTAGAATTTTGGA
TATATTTTTAATCAAGCACGGGAAATCCGGAATTAAGATCTATAAGTCCTAATATGCATT
GAATTTTTGTCTATGTTGTCATACTGAAATTGCACATATTTGACAATATATACAAAACCA
TCATACTTACTTGGGAAGCCATTTTTTTTTGCATTGCTTCGTAATAAAAATACATGCAAG
TTACTTTTCTATTTTTGCATAGCTCCGTAGCAAAGCACGGGCATCATGCTAGTTATTTCC
AAAAAGCTGGCTGACATTTAAAAGTGTTCACATTGTTAATGTAAATTATATTATCATTGT
CATTGAATGCTAGTATTTATCATAATATAGGTTGGTTCCAAAGTAGTTTTGAAGACTTCA
ACATATCCCAACAAGAGGAATGTTGCGTATGGTACTATTCGTAGTAGTGATCCAAGAACT
AAGGCGTGTGGTATTGAGTTAGGTGCGGAATTTGCCCTTGTGCGCATAGATCAATCTTTG
CTTGATAATGAGGAGTTGGTAA

Homology of Contig U35_50062 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None