- Probe CUST_14112_PI390587928
- Source Contig U35_50069
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14112_PI390587928 | Hv_44K_v2 | GTTTAGCATCAAAACCTACTAGTGCAGTGGGCAATGACACGGAAAATGCTGCCTCGATTT | 495 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.227 | 1.098 | 1.415 | 0.976 | 0.551 | 0.741 |
| Raw | 63.598 | 78.080 | 99.467 | 98.419 | 20.635 | 31.209 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53348.1 | 3960 | 2e-24 | 2594 - 2653 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_34268.3 | 3985 | 8e-25 | 2662 - 2721 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34268.1 | 3865 | 8e-25 | 2542 - 2601 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52080 | 561 | 3e-25 | 496 - 555 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50069 | 561 | 3e-25 | 496 - 555 | 100 | 60 / 60 | plus |
Contig Sequence (561 bp)
>U35_50069 561 Hv_44K_v2 ATTGCGAGCCTATTCTAGAGCACTCACAATTGCTGCTTGTGACGAATGGAGCTACAAAGC CTGGATTTTCAGTTGGTGTATCAAAAGAAATGGCTACCTTAGAAAGCAGCTCCTTGCAGG TAACCAATGTGTCAGGAATGGAGTTTTGTGAAAAAGATGGGACGCAAATTATCTTCTCAG CAGCTGACAGCAATGAGGGGCGAAACACGGAAAGCCCCTGTGCTTCTCGGTTTGTAACGA GTTCAGCATCAGGACCTGTTATTGCAGTGAGCACTGATACAGAAAATGCTGCCGTGATTC CTAGAGAAAAACGAAGGCACACATGTTCAAGCAATGATATTTCAGAAGGTCCATGTTGCA GGTCAGGGAGAAAGTTAGGTGAAAAAGATGGGACACAAATCTCCTTCTCACCAGCAACGC AAATTGCCTTCTCAACAGCAGCACAAAACGAGAGGGAAACAATGGAGAGCCCCTGTGGTT CTCAGTCTGTCATGAGTTTAGCATCAAAACCTACTAGTGCAGTGGGCAATGACACGGAAA ATGCTGCCTCGATTTGTAGAG
Homology of Contig U35_50069 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |