- Probe CUST_14108_PI390587928
- Source Contig U35_50073
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14108_PI390587928 | Hv_44K_v2 | CTAATGCCAGAGAATGGTGGCACATGCAACGTCCCAGTTGATGAAGACACTAAAGACTTT | 497 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.444 | 1.326 | 1.095 | 0.825 | 0.251 | 0.318 |
| Raw | 126.991 | 189.906 | 135.382 | 168.374 | 17.632 | 23.596 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK370475 | 3259 | 2e-24 | 2598 - 2657 | 100 | 60 / 60 | plus | ABC29973 |
| MLOC | MLOC_69715.2 | 4158 | 2e-24 | 562 - 621 | 100 | 60 / 60 | minus | ABC29973 |
| MLOC | MLOC_69715.4 | 4264 | 2e-24 | 642 - 701 | 100 | 60 / 60 | minus | ABC29973 |
| MLOC | MLOC_69715.5 | 4101 | 2e-24 | 410 - 469 | 100 | 60 / 60 | minus | ABC29973 |
| MLOC | MLOC_69715.3 | 4274 | 2e-24 | 661 - 720 | 100 | 60 / 60 | minus | ABC29973 |
| MLOC | MLOC_69715.1 | 4314 | 2e-24 | 695 - 754 | 100 | 60 / 60 | minus | ABC29973 |
| MLOC | MLOC_69714.10 | 2916 | 2e-24 | 2479 - 2538 | 100 | 60 / 60 | minus | ABC29973 ABC38776 ABC39830 |
| JLOC1 | JLOC1_46216.2 | 4082 | 8e-25 | 3427 - 3486 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46216.1 | 4190 | 8e-25 | 3535 - 3594 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52090 | 606 | 3e-25 | 498 - 557 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50073 | 606 | 3e-25 | 498 - 557 | 100 | 60 / 60 | plus |
Contig Sequence (606 bp)
>U35_50073 606 Hv_44K_v2 AGTTCATCAGCCTACCTAGAATTGCCAACGATGTTTCAGTCACCGGAAGGCCATTTGCTG GGACTAAAACTCAGGGTGTTTCTACTTATCAGTTGTCAGAATATCTGATATGGAATGTCC ATGTCTCAGAAATTACCGGTTATGCAGCTTATTGTGTGGCAGATGGTACTGCTGTGCGCT TCCAGCTTACTTCAAGATTCTGGGAGAAGGAACCTGGGAGGAACCGTGTGCCTTATTTCC TTTGTGGTTCTGTAGCAGAGGAAGGGGCAACCATTAAGATTGGTGGAACATTGCAAAGCT CTCCTTTGTCAAATGTTCCTCTGGTTGCAAAAAAGGGTCCAAAACCATGCCAAAAAGTAC CTAAAGCGCATGATACACAAACAGAGAAAGTACTTGCCCTCACCAACTCAGAACATGTAG ATCCAGAACCCAGAGAGGGTCGACTAGATGGACCTGGGGAGGGCCAAGAGACCAATGCTC TGGTTTTAGCTGATTCTCTAATGCCAGAGAATGGTGGCACATGCAACGTCCCAGTTGATG AAGACACTAAAGACTTTGAGCTCTTCCCTCCCAAAGCTGTAGCGCTGCATCGACTGAGAT GGAATA
Homology of Contig U35_50073 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g63910.2 | 1086 | 7e-82 | protein|AT hook motif family protein, expressed |
| Brachypodium v1_2 | Bradi2g55477.1 | 1198 | 3e-103 | |
| Arabidopsis v10 | None |