barSeed - Barley Seed Development Database

Probe CUST_1409_PI390587928

Source Contig U35_30039

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1409_PI390587928	Hv_44K_v2	GTACTATGTGCGTGTCTATGTAATGTGCGTGCTTTATCTATAAATTATCCCTCGTTAAAT	427	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.897	0.819	0.400	1.153	1.068	1.667
Raw	2804.843	4393.537	1835.793	9109.713	2649.750	4575.093

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70736.2	776	2e-24	632 - 691	100	60 / 60	plus	ABC01689 ABC43248
MLOC	AK356588	2841	3e-22	2786 - 2841	100	56 / 56	plus	ABC01689 ABC43248
JLOC1	JLOC1_46957.1	1062	8e-25	861 - 920	100	60 / 60	plus
Harvest21	ABC43248	437	3e-25	18 - 77	100	60 / 60	minus	ABC43248
Harvest21	ABC29695	493	3e-25	428 - 487	100	60 / 60	plus
Harvest21	ABC01689	791	3e-25	691 - 750	100	60 / 60	plus	ABC01689
Harvest35	U35_44953	437	3e-25	18 - 77	100	60 / 60	minus
Harvest35	U35_30039	493	3e-25	428 - 487	100	60 / 60	plus
Harvest35	U35_14498	816	3e-25	691 - 750	100	60 / 60	plus

Contig Sequence (493 bp)

>U35_30039 493 Hv_44K_v2
TCACACCACGCTCGTCCACTCAAGCTAGCTAGCGCCGTAGTTCACTTCAGTCCAGTCGGC
ATGGCGGCTCCGAGGGGTGCGGCACTGGTGCTGGCGATGGTGCTCGCGGCCATGGTGGTG
GCGCCGCCTGTGACGGTGCGCGCGGCCATATCGTGCTCGGCGGTGTACAGCACGCTGATG
CCGTGCCTGCAGTACGTGCAGCAGGGCGGGACGCCGGCCCGGGGCTGCTGCGCCGGCATC
CAGAACCTGCTGGCCGAGGCCAACAACAGCCCCGACCGCCGCACCATCTGCGGCTGCCTC
AAGAACGTCGCCAACGCCGCCCCCGGCGGGAGCGAGATCACCCGCGCCGCCGCGCTCCCG
TCCAAGTGCAACGTCAACCTCCCCTCCGCGAGCAGAGCAGAGTGGTGAATTGATATTTGT
GTGCGTCGTACTATGTGCGTGTCTATGTAATGTGCGTGCTTTATCTATAAATTATCCCTC
GTTAAATATATCT

Homology of Contig U35_30039 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None