barSeed - Barley Seed Development Database

Probe CUST_14093_PI390587928

Source Contig U35_50098

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14093_PI390587928	Hv_44K_v2	TTTGATGGTCCTTCAGAAAGGCCAGCAAAAAGGAAGAGAAAGAACCAATTCAGGGGTACC	416	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59004.3	1446	2e-24	442 - 501	100	60 / 60	plus	ABC03865 ABC03867
MLOC	MLOC_59004.1	1837	2e-24	833 - 892	100	60 / 60	plus	ABC03865 ABC03867
MLOC	MLOC_59004.2	1833	2e-24	829 - 888	100	60 / 60	plus	ABC03865 ABC03867
MLOC	MLOC_58276.1	1613	9e-22	530 - 584	100	55 / 55	plus	ABC03865 ABC03867
JLOC1	JLOC1_38370.1	1692	8e-25	681 - 740	100	60 / 60	plus
JLOC1	JLOC1_37849.1	1564	5e-22	485 - 539	100	55 / 55	plus
Harvest21	ABC52120	596	3e-25	417 - 476	100	60 / 60	plus
Harvest35	U35_50098	596	3e-25	417 - 476	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_50098 596 Hv_44K_v2
AGTCCATTTACCACTTCTAGCCAGGCCCCTCCCCCCAACGCGACTGCGACGAGGTACCAC
TAGCCATCATGTGCGGTGGAACAAACCTCGAGGACGTCGAGGTTCCCGTGGTGACGAGGA
AGTTGACGGAGGCAACACCGTGGATCGAGAAGAAGAAGCCCCGACAGAGCGATGGTAAGG
GCCGACATTTCACGCGTCTTCGTGGGCTTAGGGGACTCGGGCTAGATGATGACGAGGAGG
ACTTCGAGGCCGACTTCAAGGAGTTTCAGGCCAACTCCTGGGACTCCGACCAGGAGCTCG
AGCGCGATGGGGTGGGTGAGAAGGATGATGACGACGAGGTCGTCGAGATCAAGCCATTTT
CCATCGTCAAGAGGTCCCTCTCCCAAGATGACTTAAGCACCATGAGTACTTTTGGTTTTG
ATGGTCCTTCAGAAAGGCCAGCAAAAAGGAAGAGAAAGAACCAATTCAGGGGTACCCGTC
AGCGCCCCTGGGGTAAGTGGGCTGCTGAAATCAGAGATCCTAGCAAGGGTGTTCGTCTCT
GGCTTGGTACTTTCAGGAGTGCTGAAGAAGCCGCAAGAGCTTATGATGTTGCAGCA

Homology of Contig U35_50098 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None