barSeed - Barley Seed Development Database

Probe CUST_14091_PI390587928

Source Contig U35_15700

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14091_PI390587928	Hv_44K_v2	GTTGATTGCGGTTTTGGTACCTGTTTTCATCAACATTTATACATGGATTTTCCTTATCGT	1324	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.469	1.387	1.108	0.827	0.321	0.338
Raw	16753.600	24542.503	17330.900	20053.653	2808.097	3199.690

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_46487.1	1539	8e-25	1416 - 1475	100	60 / 60	plus
Harvest21	ABC03798	1431	3e-25	1325 - 1384	100	60 / 60	plus	ABC03798
Harvest35	U35_15700	1432	3e-25	1325 - 1384	100	60 / 60	plus

Contig Sequence (1432 bp)

>U35_15700 1432 Hv_44K_v2
TCCAACCAATCCATACCATAACCCTGCTCCCTCCCCTTCTCCGCCGCACCCCAAAACCCT
AGCTCCCCTCCCCTCCCCGCCCCGCCCTCCGGCCGCCGCCGCCGCCGCCAGCGAAGATGC
CGAACCTCGAGTGCCGGATGTACGAGCCGCGGTTCCCGGAGGTGGACGCGGCGGTGATGA
TCCAGGTGAAGCACATCGCCGACATGGGCGCCTACGTCTCCCTCCTCGAGTACAACAACA
TCGAGGGCATGATCCTCTTCTCCGAGCTCTCCCGCCGCCGCATCCGCTCCATCTCCTCCC
TCATCAAGGTCGGCCGCCAGGAGCCCTCCATGGTGCTCCGCGTCGACCGCGACAAGGGCT
ACATCGACCTCTCCAAGCGCAGGGTCTCGGAGGAGGAGGCCGCCACCTGCGAGGACCGCT
ACAACAAGTCCAAGCTCGTCCACTCCATCATGCGCCACGCCGCCGACACCCTCGGCGTCG
ACCTCGAGCCCCTCTACCAGCGCATCGGCTGGCCGCTCTACCGCAGGTACGGCCACGCCT
TCGAGGCCTTCAAGCTCATCGTCACCGACCCCGACGGCGTGCTCGACGTCCTCACCTACG
AGGAGACCGTCGTCGGACCCGATGGCGTCGAGGTGACTAACACTGTGCCAGCTGTCACCC
CTGAGGTTAAGGATGCCCTGGTCAAGAACATAAGGAGGAGAATGACACCACAGCCACTCA
AGATTCGTGCTGATGTTGAGATGAAATGCTTCCAGTTTGATGGTGTCCTCCACATTAAGG
AAGCCATGAGGAAAGCTGAAGCTGCTGGAAATGCTGATTGCCCTGTGAAGATTAAGCTAG
TTGCTCCTCCGCTTTATGTTCTGACCACACAGACACTTGACAAAGACCAGGGGATAGCAG
TTCTGACAAATGCAACAAAAGTTTGCGCAGAGGCAATTGAAAAGCACAAGGGGAAACTGG
TGGTGAAGGAAGCAGCTAGAGCTGTGAGCGAGAGAGACGACAAGCTGTTTGCGGACACGA
TTGAGAAGCTGAAGCTAGCAGGCGAGGAGGTCGACGGCGACGAGGACAGCGAGGAGGAGG
ACACCGGCATGGGAGACGTAGACTTCACAAAGGCTGGCGCTGGTGCGGACTGAGTCTCCT
CCCAGGCGGGATGAGATTACTTGTATAGCGCCAGCAATGAAGGCAAGAATGTTAGTTTTT
TCCTCCTGTTTGAGGAGGCACGTTGGATGAATGAGTTTTTACCCTGTTAGATATTGATCA
GTTGTAGGCTACCCGTAGTCTTGCGGATTTGTTTGCTTTTCTCTGAGCACTGATGCTGAA
TACTGTTGATTGCGGTTTTGGTACCTGTTTTCATCAACATTTATACATGGATTTTCCTTA
TCGTTTTGCTCGCTAAAAAAAAAAAAAAAAATGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15700 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18510.1	340	4e-175	protein\|expressed protein
Brachypodium v1_2	Bradi1g16700.1	341	0.0
Arabidopsis v10	AT2G40290.1	344	6e-157	Eukaryotic translation initiation factor 2 subunit 1 \| chr2:16829030-16830889 REVERSE LENGTH=344